Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis lyrata SNF2 Family

Description

Eisen et al. 1995: The SNF2 family of proteins includes representatives from a variety of species with roles in cellular processes such as transcriptional regulation (e.g. MOT1, SNF2 and BRM), maintenance of chromosome stability during mitosis (e.g. lodestar) and various aspects of processing of DNA damage, including nucleotide excision repair (e.g. RAD16 and ERCC6), recombinational pathways (e.g. RAD54) and post-replication daughter strand gap repair (e.g. RAD5). This family also includes many proteins with no known function. To better characterize this family of proteins we have used molecular phylogenetic techniques to infer evolutionary relationships among the family members. We have divided the SNF2 family into multiple subfamilies, each of which represents what we propose to be a functionally and evolutionarily distinct group. We have then used the subfamily structure to predict the functions of some of the uncharacterized proteins in the SNF2 family. We discuss possible implications of this evolutionary analysis on the general properties and evolution of the SNF2 family.

Members of this family
  SHOULD possess SNF2_N domain
  SHOULD NOT possess AP2 PHD domains

Domain alignments

This family is also present in:

References

There are 38 gene models in this family



Gene modelDescriptionDomains
318431 fgenesh1_pm.C_scaffold_3001447 Helicase_C SNF2_N zf-C3HC4
328538 fgenesh1_pm.C_scaffold_7000765 Chromo DUF1086 DUF1087 Helicase_C ResIII SNF2_N
342596 fgenesh1_pg.C_scaffold_3002359 Helicase_C SNF2_N
343537 fgenesh1_pg.C_scaffold_3003300 SNF2_N
351139 fgenesh1_pg.C_scaffold_6001732 Helicase_C SNF2_N
470503 fgenesh2_kg.1__457__AT1G05120.1 Helicase_C SNF2_N zf-C3HC4
470549 fgenesh2_kg.1__503__AT1G05490.1 Helicase_C SNF2_N
470924 fgenesh2_kg.1__878__AT1G08600.1 Helicase_C SNF2_N
471244 fgenesh2_kg.1__1198__AT1G11100.1 Helicase_C SNF2_N zf-C3HC4
474167 fgenesh2_kg.1__4121__AT1G50410.1 Helicase_C SNF2_N zf-C3HC4
475211 fgenesh2_kg.2__341__AT1G61140.1 Helicase_C SNF2_N zf-C3HC4
477943 fgenesh2_kg.3__644__AT3G06400.1 HAND Helicase_C Myb_DNA-binding ResIII SLIDE SNF2_N
478644 fgenesh2_kg.3__1345__AT3G12810.1 HSA Helicase_C ResIII SNF2_N
479436 fgenesh2_kg.3__2137__AT3G19210.1 Helicase_C SNF2_N
479519 fgenesh2_kg.3__2220__AT3G20010.1 Helicase_C SNF2_N zf-C3HC4
480306 fgenesh2_kg.3__3007__AT2G13370.1 Chromo Helicase_C ResIII SNF2_N
481010 fgenesh2_kg.4__70__AT2G21450.1 Helicase_C SNF2_N
481680 fgenesh2_kg.4__740__AT2G28290.1 AT_hook Helicase_C ResIII SNF2_N
483627 fgenesh2_kg.4__2687__AT2G44980.2 Helicase_C SNF2_N
483746 fgenesh2_kg.4__2806__AT2G46020.1 Helicase_C QLQ SNF2_N
484134 fgenesh2_kg.5__126__AT2G02090.1 Helicase_C SNF2_N
484766 fgenesh2_kg.5__758__AT3G42670.1 Helicase_C SNF2_N
485847 fgenesh2_kg.5__1839__AT3G54460.1 F-box Helicase_C SNF2_N zf-CW
487302 fgenesh2_kg.6__436__AT5G05130.1 HIRAN Helicase_C SNF2_N zf-C3HC4
488746 fgenesh2_kg.6__1880__AT5G18620.2 Helicase_C Myb_DNA-binding ResIII SLIDE SNF2_N
488814 fgenesh2_kg.6__1948__AT5G19310.1 Helicase_C SNF2_N
489124 fgenesh2_kg.6__2258__AT5G22750.1 HIRAN Helicase_C SNF2_N zf-C3HC4
496587 fgenesh2_kg.8__2403__AT5G63950.1 Helicase_C SNF2_N
496925 fgenesh2_kg.8__2741__AT5G66750.1 Helicase_C SNF2_N
866853 Al_scaffold_0005_2332 HEAT Helicase_C SNF2_N
871950 Al_scaffold_0003_591 Helicase_C ResIII SNF2_N
875318 Al_scaffold_0003_3959 Helicase_C SNF2_N
878527 Al_scaffold_0001_294 Helicase_C SEC-C SNF2_N
888252 scaffold_101046.1 SNF2_N
891646 scaffold_104440.1 Helicase_C SNF2_N
907192 scaffold_502896.1 Helicase_C SNF2_N
908729 scaffold_600786.1 HNH Helicase_C SNF2_N
917294 scaffold_800694.1 HIRAN Helicase_C SNF2_N zf-C3HC4

General references

Bork, P; Koonin, EV. 1993. An expanding family of helicases within the 'DEAD/H' superfamily. Nucleic Acids Res. 21(3):751-2 PUBMEDID:8382805
Eisen, JA; Sweder, KS; Hanawalt, PC. 1995. Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res. 23(14):2715-23 PUBMEDID:7651832