Plant Transcription factor database - Universität Potsdam
version: 3.0

Coccomyxa sp. C-169 SNF2 Family

Description

Eisen et al. 1995: The SNF2 family of proteins includes representatives from a variety of species with roles in cellular processes such as transcriptional regulation (e.g. MOT1, SNF2 and BRM), maintenance of chromosome stability during mitosis (e.g. lodestar) and various aspects of processing of DNA damage, including nucleotide excision repair (e.g. RAD16 and ERCC6), recombinational pathways (e.g. RAD54) and post-replication daughter strand gap repair (e.g. RAD5). This family also includes many proteins with no known function. To better characterize this family of proteins we have used molecular phylogenetic techniques to infer evolutionary relationships among the family members. We have divided the SNF2 family into multiple subfamilies, each of which represents what we propose to be a functionally and evolutionarily distinct group. We have then used the subfamily structure to predict the functions of some of the uncharacterized proteins in the SNF2 family. We discuss possible implications of this evolutionary analysis on the general properties and evolution of the SNF2 family.

Members of this family
  SHOULD possess SNF2_N domain
  SHOULD NOT possess AP2 PHD domains

Domain alignments

This family is also present in:

References

There are 27 gene models in this family



Gene modelDescriptionDomains
23197 gw1.22.163.1 Helicase_C SNF2_N
25945 e_gw1.3.94.1 Helicase_C SNF2_N
26084 e_gw1.3.47.1 Helicase_C ResIII SNF2_N
32750 e_gw1.17.4.1 Helicase_C SNF2_N zf-C3HC4
33667 e_gw1.20.18.1 Helicase_C SNF2_N
42582 estExt_Genewise1Plus.C_70235 Chromo Helicase_C SNF2_N
42733 estExt_Genewise1Plus.C_70459 Helicase_C SNF2_N
44728 estExt_Genewise1Plus.C_180052 SNF2_N
58242 GG.C169_S02_00531 Helicase_C SNF2_N
61402 GG.C169_S08_00256 Chromo Helicase_C SNF2_N
62836 GG.C169_S12_00200 Helicase_C SNF2_N
70968 fgeneshCV_pg.C_scaffold_2000105 Helicase_C SNF2_N
71228 fgeneshCV_pg.C_scaffold_2000365 SNF2_N zf-C3HC4
71716 fgeneshCV_pg.C_scaffold_3000257 Helicase_C SNF2_N
71730 fgeneshCV_pg.C_scaffold_3000271 Helicase_C SNF2_N
72381 fgeneshCV_pg.C_scaffold_5000004 Helicase_C SNF2_N YqaJ
72487 fgeneshCV_pg.C_scaffold_5000110 Helicase_C SNF2_N
75072 fgeneshCV_pg.C_scaffold_12000277 HEAT Helicase_C SNF2_N
81097 estExt_fgeneshCV_pg.C_10184 Helicase_C SNF2_N
81159 estExt_fgeneshCV_pg.C_10292 Helicase_C SNF2_N
81916 estExt_fgeneshCV_pg.C_40092 Helicase_C PaO SNF2_N
82024 estExt_fgeneshCV_pg.C_40300 Helicase_C SNF2_N
82113 estExt_fgeneshCV_pg.C_40456 Helicase_C SLIDE SNF2_N
83113 estExt_fgeneshCV_pg.C_100051 F-box Helicase_C SNF2_N zf-CW
83631 estExt_fgeneshCV_pg.C_130119 SNF2_N zf-C3HC4
84109 estExt_fgeneshCV_pg.C_170112 HNH Helicase_C SNF2_N
84522 estExt_fgeneshCV_pg.C_220022 Helicase_C SNF2_N

General references

Bork, P; Koonin, EV. 1993. An expanding family of helicases within the 'DEAD/H' superfamily. Nucleic Acids Res. 21(3):751-2 PUBMEDID:8382805
Eisen, JA; Sweder, KS; Hanawalt, PC. 1995. Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res. 23(14):2715-23 PUBMEDID:7651832