Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. indica SNF2 Family

Description

Eisen et al. 1995: The SNF2 family of proteins includes representatives from a variety of species with roles in cellular processes such as transcriptional regulation (e.g. MOT1, SNF2 and BRM), maintenance of chromosome stability during mitosis (e.g. lodestar) and various aspects of processing of DNA damage, including nucleotide excision repair (e.g. RAD16 and ERCC6), recombinational pathways (e.g. RAD54) and post-replication daughter strand gap repair (e.g. RAD5). This family also includes many proteins with no known function. To better characterize this family of proteins we have used molecular phylogenetic techniques to infer evolutionary relationships among the family members. We have divided the SNF2 family into multiple subfamilies, each of which represents what we propose to be a functionally and evolutionarily distinct group. We have then used the subfamily structure to predict the functions of some of the uncharacterized proteins in the SNF2 family. We discuss possible implications of this evolutionary analysis on the general properties and evolution of the SNF2 family.

Members of this family
  SHOULD possess SNF2_N domain
  SHOULD NOT possess AP2 PHD domains

Domain alignments

This family is also present in:

References

There are 40 gene models in this family



Gene modelDescriptionDomains
OsIBCD000020 Chr01_35,4068,,,1,4068, Helicase_C SNF2_N TRAP_beta
OsIBCD001724 Chr01_2625,4062,,,1,4062, HAND Helicase_C Myb_DNA-binding SNF2_N
OsIBCD003501 Chr01_5412,3771,,,1,3771, Helicase_C SNF2_N
OsIBCD004072 Chr01_6270,3318,,,1,3318, Chromo Helicase_C ResIII SNF2_N
OsIBCD004531 Chr01_6903,3897,,,1,3897, F-box Helicase_C SNF2_N zf-CW
OsIBCD004812 Chr02_143,6555,,,1,6555, Helicase_C QLQ SNF2_N
OsIBCD005146 Chr02_634,2811,,,1,2811, HEAT Helicase_C SNF2_N
OsIBCD006668 Chr02_3179,2880,,,1,2880, HIRAN Helicase_C SNF2_N zf-C3HC4
OsIBCD007424 Chr02_4321,4092,,,1,4092, Helicase_C SNF2_N
OsIBCD007612 Chr02_4620,2919,,,1,2919, HSA ResIII SNF2_N
OsIBCD008060 Chr02_5248,2712,,,1,2712, Helicase_C SNF2_N
OsIBCD008547 Chr03_49,1497,,,1,1497, Helicase_C SNF2_N
OsIBCD010161 Chr03_2275,4236,,,1,4236, Helicase_C SNF2_N
OsIBCD011829 Chr03_5166,2430,,,1,2430, Helicase_C SNF2_N
OsIBCD013355 Chr04_1071,3408,,,1,3408, HIRAN Helicase_C SNF2_N UBA zf-C3HC4
OsIBCD015277 Chr04_4143,2730,,,1,2730, Helicase_C SNF2_N
OsIBCD015692 Chr04_4735,3156,,,1,3156, Helicase_C SNF2_N zf-C3HC4
OsIBCD016114 Chr04_5311,5184,,,1,5184, Helicase_C SNF2_N
OsIBCD016418 Chr05_413,3267,,,1,3267, Helicase_C SNF2_N
OsIBCD016462 Chr05_472,3483,,,1,3483, HAND Helicase_C Myb_DNA-binding SLIDE SNF2_N
OsIBCD017128 Chr05_1627,2565,,,1,2565, Helicase_C SNF2_N
OsIBCD017889 Chr05_3033,4233,,,1,4233, Helicase_C SNF2_N
OsIBCD019117 Chr06_25,6210,,,1,6210, SNF2_N
OsIBCD019635 Chr06_794,3975,,,1,3975, Chromo DUF1086 DUF1087 Helicase_C ResIII SNF2_N
OsIBCD020049 Chr06_1428,12834,,,1,12834, AT_hook Helicase_C ResIII SNF2_N
OsIBCD020050 Chr06_1431,2850,,,1,2850, Helicase_C SNF2_N
OsIBCD023206 Chr07_1998,3204,,,1,3204, Helicase_C SNF2_N
OsIBCD023598 Chr07_2640,2448,,,1,2448, Helicase_C SNF2_N
OsIBCD024103 Chr07_3416,3438,,,1,3438, HNH Helicase_C SNF2_N
OsIBCD024313 Chr07_3733,2103,,,1,2103, Helicase_C SNF2_N
OsIBCD024355 Chr07_3789,2466,,,1,2466, HIRAN Helicase_C SNF2_N zf-C3HC4
OsIBCD024477 Chr07_3958,5205,,,1,5205, Chromo Helicase_C SNF2_N
OsIBCD024611 Chr07_4147,4593,,,1,4593, Helicase_C SNF2_N
OsIBCD024680 Chr07_4247,4128,,,1,4128, Helicase_C SNF2_N
OsIBCD025172 Chr08_714,3591,,,1,3591, Helicase_C SNF2_N zf-C3HC4
OsIBCD025567 Chr08_1402,2547,,,1,2547, Helicase_C SNF2_N
OsIBCD028705 Chr09_2213,2517,,,1,2517, Helicase_C SNF2_N
OsIBCD030831 Chr10_2347,3483,,,1,3483, SNF2_N
OsIBCD031500 Chr10_3322,1977,,,1,1977, SNF2_N
OsIBSD047579 Supscaffold2582_1,4128,,,1,4128, Helicase_C SNF2_N

General references

Bork, P; Koonin, EV. 1993. An expanding family of helicases within the 'DEAD/H' superfamily. Nucleic Acids Res. 21(3):751-2 PUBMEDID:8382805
Eisen, JA; Sweder, KS; Hanawalt, PC. 1995. Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res. 23(14):2715-23 PUBMEDID:7651832