Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica SNF2 Family

Description

Eisen et al. 1995: The SNF2 family of proteins includes representatives from a variety of species with roles in cellular processes such as transcriptional regulation (e.g. MOT1, SNF2 and BRM), maintenance of chromosome stability during mitosis (e.g. lodestar) and various aspects of processing of DNA damage, including nucleotide excision repair (e.g. RAD16 and ERCC6), recombinational pathways (e.g. RAD54) and post-replication daughter strand gap repair (e.g. RAD5). This family also includes many proteins with no known function. To better characterize this family of proteins we have used molecular phylogenetic techniques to infer evolutionary relationships among the family members. We have divided the SNF2 family into multiple subfamilies, each of which represents what we propose to be a functionally and evolutionarily distinct group. We have then used the subfamily structure to predict the functions of some of the uncharacterized proteins in the SNF2 family. We discuss possible implications of this evolutionary analysis on the general properties and evolution of the SNF2 family.

Members of this family
  SHOULD possess SNF2_N domain
  SHOULD NOT possess AP2 PHD domains

Domain alignments

This family is also present in:

References

There are 49 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g01312.1 retrotransposon protein, putative, Ty1-copia subclass, expressed Helicase_C SNF2_N
LOC_Os01g27040.1 chromatin-remodeling complex ATPase chain, putative, expressed HAND Helicase_C SLIDE SNF2_N
LOC_Os01g44990.1 ercc6 protein, putative, expressed Helicase_C RRM_1 SNF2_N
LOC_Os01g57110.1 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N zf-C3HC4
LOC_Os01g57110.2 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N zf-C3HC4
LOC_Os01g65850.1 CHD3-type chromatin-remodeling factor PICKLE, putative Helicase_C ResIII SNF2_N
LOC_Os01g72310.1 OsFBO7 - F-box and other domain containing protein, expressed F-box Helicase_C SNF2_N zf-CW
LOC_Os02g02050.1 SNF2 family N-terminal domain containing protein, expressed SNF2_N
LOC_Os02g02290.1 SNF2 family N-terminal domain containing protein, expressed Helicase_C QLQ SNF2_N
LOC_Os02g06592.1 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N
LOC_Os02g32570.1 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N zf-C3HC4
LOC_Os02g32570.2 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N zf-C3HC4
LOC_Os02g43460.1 required to maintain repression 1, putative Helicase_C SNF2_N
LOC_Os02g52510.1 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N
LOC_Os03g01200.1 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N
LOC_Os03g22900.1 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N
LOC_Os03g51230.1 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N
LOC_Os03g51230.2 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N
LOC_Os04g09800.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative HIRAN Helicase_C SNF2_N zf-C3HC4
LOC_Os04g47830.1 SNF2 family N-terminal domain containing protein, expressed SNF2_N
LOC_Os04g53720.1 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N zf-C3HC4
LOC_Os04g59620.1 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N
LOC_Os04g59624.1 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N
LOC_Os04g59624.2 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N
LOC_Os04g59624.3 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N
LOC_Os05g05230.1 expressed protein Helicase_C ResIII SNF2_N
LOC_Os05g05780.1 chromatin-remodeling complex ATPase chain, putative, expressed HAND Helicase_C SLIDE SNF2_N
LOC_Os05g15890.1 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N
LOC_Os05g32610.1 required to maintain repression 1, putative, expressed Helicase_C SNF2_N
LOC_Os06g08480.1 CHD3-type chromatin-remodeling factor PICKLE, putative, expressed Chromo DUF1086 DUF1087 Helicase_C ResIII SNF2_N
LOC_Os06g14440.1 DRD1, putative, expressed Helicase_C SNF2_N
LOC_Os06g14440.2 DRD1, putative, expressed Helicase_C SNF2_N
LOC_Os06g14440.3 DRD1, putative, expressed Helicase_C SNF2_N
LOC_Os06g14440.4 DRD1, putative, expressed Helicase_C SNF2_N
LOC_Os07g25390.1 DRD1, putative, expressed Helicase_C SNF2_N
LOC_Os07g40730.1 SNF2 domain-containing protein, putative, expressed HNH Helicase_C SNF2_N
LOC_Os07g40730.2 SNF2 domain-containing protein, putative, expressed HNH Helicase_C SNF2_N
LOC_Os07g40730.3 SNF2 domain-containing protein, putative, expressed Helicase_C SNF2_N
LOC_Os07g44210.1 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N
LOC_Os07g44800.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed HIRAN Helicase_C SNF2_N zf-C3HC4
LOC_Os07g46590.1 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N
LOC_Os07g49210.1 helicase conserved C-terminal domain containing protein, expressed Helicase_C Methyltransf_11 SNF2_N
LOC_Os08g08220.1 EDA16, putative, expressed Helicase_C SNF2_N zf-C3HC4
LOC_Os08g08220.2 EDA16, putative, expressed Helicase_C SNF2_N zf-C3HC4
LOC_Os08g08220.3 EDA16, putative, expressed SNF2_N
LOC_Os08g14610.1 DRD1, putative Helicase_C SNF2_N
LOC_Os09g27060.1 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N
LOC_Os10g31970.1 SNF2 family N-terminal domain containing protein, expressed Helicase_C SNF2_N
LOC_Os10g41620.1 retrotransposon protein, putative, unclassified KH_1 SNF2_N

General references

Bork, P; Koonin, EV. 1993. An expanding family of helicases within the 'DEAD/H' superfamily. Nucleic Acids Res. 21(3):751-2 PUBMEDID:8382805
Eisen, JA; Sweder, KS; Hanawalt, PC. 1995. Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res. 23(14):2715-23 PUBMEDID:7651832