Plant Transcription factor database - Universität Potsdam
version: 3.0

Populus trichocarpa SNF2 Family

Description

Eisen et al. 1995: The SNF2 family of proteins includes representatives from a variety of species with roles in cellular processes such as transcriptional regulation (e.g. MOT1, SNF2 and BRM), maintenance of chromosome stability during mitosis (e.g. lodestar) and various aspects of processing of DNA damage, including nucleotide excision repair (e.g. RAD16 and ERCC6), recombinational pathways (e.g. RAD54) and post-replication daughter strand gap repair (e.g. RAD5). This family also includes many proteins with no known function. To better characterize this family of proteins we have used molecular phylogenetic techniques to infer evolutionary relationships among the family members. We have divided the SNF2 family into multiple subfamilies, each of which represents what we propose to be a functionally and evolutionarily distinct group. We have then used the subfamily structure to predict the functions of some of the uncharacterized proteins in the SNF2 family. We discuss possible implications of this evolutionary analysis on the general properties and evolution of the SNF2 family.

Members of this family
  SHOULD possess SNF2_N domain
  SHOULD NOT possess AP2 PHD domains

Domain alignments

This family is also present in:

References

There are 48 gene models in this family



Gene modelDescriptionDomains
171407 gw1.I.7.1 Helicase_C SNF2_N
172227 gw1.I.827.1 Helicase_C ResIII SNF2_N
195587 gw1.IV.676.1 Helicase_C SNF2_N
205910 gw1.V.1311.1 Helicase_C SNF2_N
228966 gw1.X.3663.1 Helicase_C SNF2_N
229734 gw1.X.4431.1 HAND Helicase_C Myb_DNA-binding SLIDE SNF2_N
230832 gw1.X.5529.1 SNF2_N zf-C3HC4
231312 gw1.X.6009.1 Helicase_C ResIII SNF2_N
234045 gw1.XI.2025.1 Helicase_C SNF2_N zf-C3HC4
241484 gw1.XIII.1733.1 Helicase_C SNF2_N
244585 gw1.XIV.1328.1 Helicase_C SNF2_N
250259 gw1.XIX.2659.1 Helicase_C SNF2_N
255249 gw1.XVI.1188.1 HIRAN Helicase_C SNF2_N zf-C3HC4
255250 gw1.XVI.1189.1 Helicase_C SNF2_N zf-C3HC4
255259 gw1.XVI.1198.1 Helicase_C SNF2_N zf-C3HC4
255263 gw1.XVI.1202.1 HIRAN SNF2_N zf-C3HC4
255265 gw1.XVI.1204.1 Helicase_C SNF2_N zf-C3HC4
267841 gw1.130.163.1 Helicase_C SNF2_N
286483 gw1.40.243.1 Helicase_C SNF2_N
293462 gw1.66.135.1 HIRAN Helicase_C SNF2_N zf-C3HC4
418053 gw1.VI.2426.1 HIRAN Helicase_C SNF2_N zf-C3HC4
419389 gw1.VIII.817.1 Helicase_C ResIII SNF2_N
553466 eugene3.00030099 Helicase_C ResIII SNF2_N
560465 eugene3.00060424 Helicase_C SNF2_N
562497 eugene3.00070435 Helicase_C SNF2_N
565767 eugene3.00100325 ResIII SNF2_N
566361 eugene3.00100919 Helicase_C SNF2_N
569944 eugene3.00120597 SNF2_N
570689 eugene3.00130053 SNF2_N
576143 eugene3.00160278 SNF2_N
576236 eugene3.00160371 Helicase_C SNF2_N
595082 eugene3.00660276 SNF2_N
656302 grail3.0010005901 Helicase_C SNF2_N
657600 grail3.0009043901 SNF2_N
659448 grail3.0022008001 SNF2_N
713719 estExt_Genewise1_v1.C_LG_IV2298 SNF2_N zf-C3HC4
723010 estExt_Genewise1_v1.C_LG_IX3687 Helicase_C ResIII SNF2_N
764977 fgenesh4_pg.C_LG_VII001322 Helicase_C SNF2_N zf-C3HC4
766858 fgenesh4_pg.C_LG_VIII001872 Helicase_C SNF2_N
781297 fgenesh4_pg.C_scaffold_40000047 Helicase_C SNF2_N
782376 fgenesh4_pg.C_scaffold_64000238 Helicase_C SEC-C SNF2_N
795667 fgenesh4_pg.C_scaffold_18861000001 SNF2_N
800217 fgenesh4_pm.C_LG_III000682 F-box Helicase_C SNF2_N zf-CW
800935 fgenesh4_pm.C_LG_V000027 Helicase_C SNF2_N
820023 estExt_fgenesh4_pg.C_LG_VII1056 Helicase_C SNF2_N
823728 estExt_fgenesh4_pg.C_LG_XIII0316 HEAT Helicase_C SNF2_N
824295 estExt_fgenesh4_pg.C_LG_XIV0934 SNF2_N
826092 estExt_fgenesh4_pg.C_LG_XIX0221 SNF2_N

General references

Bork, P; Koonin, EV. 1993. An expanding family of helicases within the 'DEAD/H' superfamily. Nucleic Acids Res. 21(3):751-2 PUBMEDID:8382805
Eisen, JA; Sweder, KS; Hanawalt, PC. 1995. Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res. 23(14):2715-23 PUBMEDID:7651832