Plant Transcription factor database - Universität Potsdam
version: 3.0

Selaginella moellendorffii SNF2 Family

Description

Eisen et al. 1995: The SNF2 family of proteins includes representatives from a variety of species with roles in cellular processes such as transcriptional regulation (e.g. MOT1, SNF2 and BRM), maintenance of chromosome stability during mitosis (e.g. lodestar) and various aspects of processing of DNA damage, including nucleotide excision repair (e.g. RAD16 and ERCC6), recombinational pathways (e.g. RAD54) and post-replication daughter strand gap repair (e.g. RAD5). This family also includes many proteins with no known function. To better characterize this family of proteins we have used molecular phylogenetic techniques to infer evolutionary relationships among the family members. We have divided the SNF2 family into multiple subfamilies, each of which represents what we propose to be a functionally and evolutionarily distinct group. We have then used the subfamily structure to predict the functions of some of the uncharacterized proteins in the SNF2 family. We discuss possible implications of this evolutionary analysis on the general properties and evolution of the SNF2 family.

Members of this family
  SHOULD possess SNF2_N domain
  SHOULD NOT possess AP2 PHD domains

Domain alignments

This family is also present in:

References

There are 32 gene models in this family



Gene modelDescriptionDomains
102612 e_gw1.26.12.1 Helicase_C SNF2_N
102849 e_gw1.26.425.1 Helicase_C SNF2_N
109740 e_gw1.39.330.1 Helicase_C SNF2_N
110395 e_gw1.40.372.1 Helicase_C SNF2_N
110695 e_gw1.40.367.1 HIRAN Helicase_C SNF2_N zf-C3HC4
123971 e_gw1.73.226.1 Helicase_C SNF2_N
130534 e_gw1.101.4.1 Chromo Helicase_C SNF2_N
139206 estExt_Genewise1.C_00014 Helicase_C SNF2_N
143427 estExt_Genewise1.C_60612 F-box Helicase_C SNF2_N zf-CW
164481 estExt_Genewise1Plus.C_02384 Helicase_C SNF2_N
186944 estExt_Genewise1Plus.C_1400016 HEAT Helicase_C SNF2_N
235696 fgenesh1_pm.C_scaffold_93000035 Helicase_C SNF2_N
407530 fgenesh2_pg.C_scaffold_7000161 Helicase_C SNF2_N
408 gw1.35.9.1 HIRAN Helicase_C SNF2_N zf-C3HC4
412612 fgenesh2_pg.C_scaffold_18000188 Helicase_C SNF2_N
421707 fgenesh2_pg.C_scaffold_53000064 SNF2_N
426581 fgenesh2_pg.C_scaffold_84000052 Helicase_C SNF2_N
429540 fgenesh2_pg.C_scaffold_116000030 Helicase_C SNF2_N
429547 fgenesh2_pg.C_scaffold_116000037 Helicase_C SNF2_N
429595 fgenesh2_pg.C_scaffold_117000036 Helicase_C SNF2_N
431801 fgenesh2_pg.C_scaffold_170000024 Helicase_C SNF2_N
440203 estExt_fgenesh2_pg.C_90391 HAND Helicase_C Myb_DNA-binding ResIII SLIDE SNF2_N
440815 estExt_fgenesh2_pg.C_120275 Helicase_C ResIII SNF2_N
441095 estExt_fgenesh2_pg.C_140091 Helicase_C SMP SNF2_N
441121 estExt_fgenesh2_pg.C_140182 Helicase_C SNF2_N
444050 estExt_fgenesh2_pg.C_390095 Helicase_C ResIII SNF2_N
50459 gw1.21.377.1 Helicase_C SNF2_N
50956 gw1.20.551.1 Helicase_C SNF2_N
60241 gw1.6.813.1 Bromodomain Helicase_C SNF2_N
76516 e_gw1.1.1195.1 Helicase_C SNF2_N
80139 e_gw1.3.938.1 HNH Helicase_C SNF2_N
84809 e_gw1.6.822.1 HAND Helicase_C SLIDE SNF2_N

General references

Bork, P; Koonin, EV. 1993. An expanding family of helicases within the 'DEAD/H' superfamily. Nucleic Acids Res. 21(3):751-2 PUBMEDID:8382805
Eisen, JA; Sweder, KS; Hanawalt, PC. 1995. Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res. 23(14):2715-23 PUBMEDID:7651832