Plant Transcription factor database - Universität Potsdam
version: 3.0

Zea mays SNF2 Family

Description

Eisen et al. 1995: The SNF2 family of proteins includes representatives from a variety of species with roles in cellular processes such as transcriptional regulation (e.g. MOT1, SNF2 and BRM), maintenance of chromosome stability during mitosis (e.g. lodestar) and various aspects of processing of DNA damage, including nucleotide excision repair (e.g. RAD16 and ERCC6), recombinational pathways (e.g. RAD54) and post-replication daughter strand gap repair (e.g. RAD5). This family also includes many proteins with no known function. To better characterize this family of proteins we have used molecular phylogenetic techniques to infer evolutionary relationships among the family members. We have divided the SNF2 family into multiple subfamilies, each of which represents what we propose to be a functionally and evolutionarily distinct group. We have then used the subfamily structure to predict the functions of some of the uncharacterized proteins in the SNF2 family. We discuss possible implications of this evolutionary analysis on the general properties and evolution of the SNF2 family.

Members of this family
  SHOULD possess SNF2_N domain
  SHOULD NOT possess AP2 PHD domains

Domain alignments

This family is also present in:

References

There are 72 gene models in this family



Gene modelDescriptionDomains
GRMZM2G000342_P01 Helicase_C ResIII SNF2_N
GRMZM2G010085_P01 HAND Helicase_C SLIDE SNF2_N
GRMZM2G010342_P01 Chromo Helicase_C SNF2_N
GRMZM2G015190_P01 HIRAN SNF2_N
GRMZM2G021233_P01 Helicase_C SNF2_N zf-C3HC4
GRMZM2G021233_P02 Helicase_C SNF2_N zf-C3HC4
GRMZM2G023559_P01 SNF2_N zf-C3HC4
GRMZM2G030768_P01 HIRAN Helicase_C SNF2_N zf-C3HC4
GRMZM2G035802_P01 Chromo Helicase_C SNF2_N
GRMZM2G036695_P01 Helicase_C SNF2_N
GRMZM2G036695_P02 Helicase_C SNF2_N
GRMZM2G036695_P03 Helicase_C SNF2_N
GRMZM2G047500_P02 SNF2_N
GRMZM2G064574_P01 Helicase_C SNF2_N
GRMZM2G064574_P02 Helicase_C SNF2_N
GRMZM2G070264_P01 Helicase_C SNF2_N
GRMZM2G071025_P01 Helicase_C SNF2_N
GRMZM2G071025_P02 SNF2_N
GRMZM2G076931_P02 QLQ SNF2_N
GRMZM2G076931_P03 QLQ SNF2_N
GRMZM2G076931_P04 QLQ SNF2_N
GRMZM2G078364_P01 F-box SNF2_N zf-CW
GRMZM2G085689_P01 Helicase_C ResIII SNF2_N
GRMZM2G085689_P02 Helicase_C ResIII SNF2_N
GRMZM2G085689_P03 Helicase_C ResIII SNF2_N
GRMZM2G091262_P01 SNF2_N
GRMZM2G093940_P01 Helicase_C SNF2_N
GRMZM2G097289_P01 Helicase_C SNF2_N
GRMZM2G097289_P02 Helicase_C SNF2_N
GRMZM2G097289_P03 Helicase_C SNF2_N
GRMZM2G102625_P01 Helicase_C ResIII SNF2_N
GRMZM2G102625_P02 Helicase_C SNF2_N
GRMZM2G108166_P01 Helicase_C ResIII SNF2_N
GRMZM2G117060_P01 Helicase_C SNF2_N
GRMZM2G117060_P02 SNF2_N
GRMZM2G117629_P01 SNF2_N
GRMZM2G126590_P01 Helicase_C SNF2_N
GRMZM2G126590_P02 Helicase_C SNF2_N
GRMZM2G126590_P03 Helicase_C SNF2_N
GRMZM2G126590_P04 Helicase_C SNF2_N
GRMZM2G126590_P05 Helicase_C ResIII SNF2_N
GRMZM2G126774_P01 Helicase_C SNF2_N
GRMZM2G126774_P02 Helicase_C SNF2_N
GRMZM2G126774_P03 SNF2_N
GRMZM2G126774_P04 Helicase_C SNF2_N
GRMZM2G132405_P01 DUF246 SNF2_N
GRMZM2G138125_P01 Helicase_C SNF2_N
GRMZM2G138125_P02 Helicase_C SNF2_N
GRMZM2G138125_P03 Helicase_C SNF2_N
GRMZM2G146041_P01 Helicase_C SNF2_N
GRMZM2G146041_P02 SNF2_N
GRMZM2G146041_P03 Helicase_C SNF2_N
GRMZM2G148249_P01 HIRAN Helicase_C SNF2_N zf-C3HC4
GRMZM2G148249_P02 HIRAN SNF2_N
GRMZM2G149157_P01 SNF2_N
GRMZM2G149157_P02 Helicase_C SNF2_N zf-C3HC4
GRMZM2G154100_P01 Chromo DUF1086 DUF1087 Helicase_C ResIII SNF2_N
GRMZM2G154100_P02 Chromo DUF1086 DUF1087 Helicase_C ResIII SNF2_N
GRMZM2G154946_P01 Helicase_C SNF2_N
GRMZM2G163849_P02 QLQ SNF2_N
GRMZM2G163849_P03 QLQ SNF2_N
GRMZM2G163849_P04 QLQ SNF2_N
GRMZM2G163849_P05 Helicase_C SNF2_N
GRMZM2G167780_P01 Chromo Helicase_C SNF2_N
GRMZM2G168096_P01 HEAT Helicase_C SNF2_N
GRMZM2G169042_P01 Helicase_C SNF2_N
GRMZM2G172250_P01 SNF2_N
GRMZM2G172356_P01 Helicase_C SNF2_N
GRMZM2G172356_P02 SNF2_N
GRMZM2G177165_P01 Helicase_C SNF2_N
GRMZM2G178435_P01 Helicase_C SNF2_N
GRMZM2G180705_P01 HEAT Helicase_C SNF2_N

General references

Bork, P; Koonin, EV. 1993. An expanding family of helicases within the 'DEAD/H' superfamily. Nucleic Acids Res. 21(3):751-2 PUBMEDID:8382805
Eisen, JA; Sweder, KS; Hanawalt, PC. 1995. Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res. 23(14):2715-23 PUBMEDID:7651832