Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica TRAF Family

Description

Stogios et al. 2005:The BTB domain (also known as the POZ domain) is a versatile protein-protein interaction motif that participates in a wide range of cellular functions, including transcriptional regulation, cytoskeleton dynamics, ion channel assembly and gating, and targeting proteins for ubiquitination. Several BTB domain structures have been experimentally determined, revealing a highly conserved core structure. The BTB domain is typically found as a single copy in proteins that contain only one or two other types of domain, and this defines the BTB-zinc finger (BTB-ZF), BTB-BACK-kelch (BBK), voltage-gated potassium channel T1 (T1-Kv), MATH-BTB, BTB-NPH3 and BTB-BACK-PHR (BBP) families of proteins, among others. BTB-ZF proteins are also known as the POK (POZ and Krüppel zinc finger) proteins. Many members of this large family have been characterized as important transcriptional factors, and several are implicated in development and cancer, most notably BCL6, leukemia/lymphoma related factor (LRF)/Pokemon, PLZF, hypermethylated in cancer (HIC)1 and Myc interacting zinc finger (MIZ)1.

Members of this family
  SHOULD possess BTB domain
  SHOULD NOT possess BACK MATH NPH3 zf-TAZ domains

Domain alignments

This family is also present in:

References

There are 79 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g66890.3 BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed BTB
LOC_Os01g70670.1 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed BTB
LOC_Os01g70670.2 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed BTB
LOC_Os01g72020.1 BTBA3 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed Ank BTB
LOC_Os01g72020.2 BTBA3 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed Ank BTB
LOC_Os02g20600.1 BTB/POZ domain containing protein, putative BTB
LOC_Os02g52316.1 BTB/POZ domain containing protein, putative BTB
LOC_Os03g46440.1 BTBA4 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed Ank BTB
LOC_Os03g46440.2 BTBA4 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed Ank BTB
LOC_Os03g46440.3 BTBA4 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed Ank BTB
LOC_Os03g48120.1 BTB/POZ domain containing protein, putative BTB
LOC_Os04g35370.1 MBTB5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed BTB
LOC_Os04g40630.1 BTBZ4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed BTB
LOC_Os04g53390.1 MrBTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH-related domain BTB
LOC_Os04g53430.1 MBTB8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed BTB
LOC_Os04g56460.1 MBTB9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed BTB
LOC_Os05g27880.1 BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed BTB F5_F8_type_C
LOC_Os05g27880.2 BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed BTB F5_F8_type_C
LOC_Os05g27880.3 BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed BTB
LOC_Os05g33050.1 ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed Arm BTB HEAT
LOC_Os05g44530.1 BTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain BTB
LOC_Os05g44540.1 MrBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH-related domain BTB
LOC_Os06g14060.1 MBTB10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed BTB
LOC_Os06g14060.2 MBTB10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed BTB
LOC_Os06g21330.1 ABB1 - Ankyrin repeat region with 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains, expressed BTB
LOC_Os06g31100.1 E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed BTB
LOC_Os06g45720.1 BTB/POZ domain containing protein BTB
LOC_Os06g45770.1 BTB/POZ domain containing protein, putative BTB
LOC_Os06g46240.1 BTB/POZ domain containing protein, putative, expressed BTB
LOC_Os07g15490.1 C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed BTB
LOC_Os08g01320.1 C3-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed BTB
LOC_Os08g01320.2 C3-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed BTB
LOC_Os08g03480.1 MBTB16 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain BTB
LOC_Os08g03500.1 MBTB17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain BTB
LOC_Os08g03510.1 MBTB18 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain BTB
LOC_Os08g03530.1 MBTB19 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain BTB
LOC_Os08g13060.1 MBTB22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed BTB
LOC_Os08g13070.1 MBTB23 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed BTB
LOC_Os08g13090.1 BTB/POZ domain containing protein BTB
LOC_Os08g13250.1 speckle-type POZ protein, putative BTB
LOC_Os08g25240.1 MBTB25 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain BTB
LOC_Os08g38700.1 C3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed BTB
LOC_Os08g40460.1 BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain BTB
LOC_Os08g40490.1 BTB/POZ domain containing protein BTB
LOC_Os08g41120.1 MBTB29 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain BTB
LOC_Os08g41150.1 MBTB30 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain BTB
LOC_Os08g41170.1 TD and POZ domain-containing protein 4, putative BTB
LOC_Os08g41180.1 MBTB31 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed BTB
LOC_Os08g41220.1 BTB/POZ domain containing protein BTB
LOC_Os08g41230.1 BTB5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain BTB
LOC_Os08g41240.1 MrBTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH-related domain BTB
LOC_Os09g06890.1 BTB/POZ domain containing protein BTB
LOC_Os09g16850.1 A3-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence BTB
LOC_Os09g16870.1 A3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence BTB
LOC_Os10g28840.1 speckle-type POZ protein, putative BTB
LOC_Os10g28870.1 MBTB40 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain BTB
LOC_Os10g28970.2 BTB6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed BTB
LOC_Os10g28975.1 BTB/POZ domain containing protein, putative, expressed BTB
LOC_Os10g29050.2 MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed BTB
LOC_Os10g29120.1 speckle-type POZ protein, putative BTB
LOC_Os10g29190.1 BTB/POZ domain containing protein, expressed BTB
LOC_Os10g29260.1 speckle-type POZ protein, putative BTB
LOC_Os10g29320.1 speckle-type POZ protein, putative, expressed BTB
LOC_Os10g29360.1 BTB/POZ domain containing protein, putative BTB
LOC_Os10g29440.1 speckle-type POZ protein, putative, expressed BTB
LOC_Os10g29920.1 snRNP protein, putative BTB
LOC_Os10g30040.1 BTB/POZ domain containing protein, putative BTB
LOC_Os10g30350.1 retrotransposon protein, putative, unclassified BTB
LOC_Os11g02070.1 BTB8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed BTB
LOC_Os11g04600.1 BTBA5 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed Ank BTB
LOC_Os11g24550.1 MBTB61 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed BTB
LOC_Os11g40220.1 MBTB62 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed BTB
LOC_Os11g40490.1 MBTB63 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain BTB
LOC_Os11g41260.1 snRNP protein, putative BTB
LOC_Os11g41290.1 MrBTB5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH-related domain, expressed BTB
LOC_Os11g41300.1 MBTB65 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain BTB
LOC_Os11g45560.1 MBTB68 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain BTB
LOC_Os12g02030.1 BTB9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed BTB
LOC_Os12g04410.1 BTBA6 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed Ank BTB

General references

Deweindt, C; Albagli, O; Bernardin, F; Dhordain, P; Quief, S; Lantoine, D; Kerckaert, JP; Leprince, D. 1995. The LAZ3/BCL6 oncogene encodes a sequence-specific transcriptional inhibitor: a novel function for the BTB/POZ domain as an autonomous repressing domain. Cell Growth Differ. 6(12):1495-503 PUBMEDID:9019154
Stogios, PJ; Downs, GS; Jauhal, JJ; Nandra, SK; Privé, GG. 2005. Sequence and structural analysis of BTB domain proteins. Genome Biol. 6(10):R82 PUBMEDID:16207353