Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis thaliana Tify Family

Description

Nishii et al. 2000: By differential screening of an arrayed normalized cDNA library from the inflorescence apex in Arabidopsis, a cDNA clone having a deduced amino acid sequence with a motif for a zinc finger was isolated as one of the genes expressed specifically in the reproductive phase. The deduced protein has a modular structure with a putative single C2-C2 zinc-finger motif distantly related to a GATA-1-type finger, a basic region with a sequence resembling a nuclear localization signal, and an acidic region. The gene seemed to have been formed by the exon-shuffling during its molecular evolution, since individual domains are encoded by discrete exons. RNA gel blot analysis showed its expression in shoot apex and flowers in the reproductive phase. The gene was named ZIM for Zinc-finger protein expressed in Inflorescence Meristem. The nuclear localization of ZIM was detected using GFP as a reporter. These results suggest that ZIM is a putative transcription factor involved in inflorescence and flower development.

Members of this family
  SHOULD possess tify domain
  SHOULD NOT possess GATA domain

Domain alignments

This family is also present in:

References

There are 26 gene models in this family



Gene modelDescriptionDomains
AT1G17380.1 JAZ5/TIFY11A (JASMONATE-ZIM-DOMAIN PROTEIN 5) CCT_2 tify
AT1G19180.1 JAZ1/TIFY10A (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding CCT_2 tify
AT1G19180.2 JAZ1/TIFY10A (JASMONATE-ZIM-DOMAIN PROTEIN 1) CCT_2 tify
AT1G30135.1 JAZ8/TIFY5A (JASMONATE-ZIM-DOMAIN PROTEIN 8) CCT_2 tify
AT1G48500.1 JAZ4/TIFY6A (JASMONATE-ZIM-DOMAIN PROTEIN 4) CCT_2 tify
AT1G48500.2 JAZ4/TIFY6A (JASMONATE-ZIM-DOMAIN PROTEIN 4) CCT_2 tify
AT1G48500.3 JAZ4/TIFY6A (JASMONATE-ZIM-DOMAIN PROTEIN 4) CCT_2 tify
AT1G70700.1 JAZ9/TIFY7 (JASMONATE-ZIM-DOMAIN PROTEIN 9) tify
AT1G70700.2 JAZ9/TIFY7 (JASMONATE-ZIM-DOMAIN PROTEIN 9) tify
AT1G70700.3 JAZ9/TIFY7 (JASMONATE-ZIM-DOMAIN PROTEIN 9) CCT_2 tify
AT1G72450.1 JAZ6/TIFY11B (JASMONATE-ZIM-DOMAIN PROTEIN 6) CCT_2 tify
AT1G74950.1 JAZ2/TIFY10B (JASMONATE-ZIM-DOMAIN PROTEIN 2) CCT_2 tify
AT2G34600.1 JAZ7/TIFY5B (JASMONATE-ZIM-DOMAIN PROTEIN 7) tify
AT3G17860.1 JAI3/JAZ3/TIFY6B (JASMONATE-ZIM-DOMAIN PROTEIN 3) CCT_2 tify
AT3G17860.2 JAI3/JAZ3/TIFY6B (JASMONATE-ZIM-DOMAIN PROTEIN 3) CCT_2 tify
AT3G17860.3 JAI3/JAZ3/TIFY6B (JASMONATE-ZIM-DOMAIN PROTEIN 3) CCT_2 tify
AT3G21175.3 ZML1 (ZIM-LIKE 1) CCT CCT_2 tify
AT3G43440.1 JAZ11/TIFY3A (JASMONATE-ZIM-DOMAIN PROTEIN 11) CCT_2 tify
AT4G14713.1 PPD1 (PEAPOD 1) CCT_2 tify
AT4G14713.2 PPD1 (PEAPOD 1) CCT_2 tify
AT4G14720.1 PPD2 (PEAPOD 2) CCT_2 tify
AT4G32570.1 TIFY8 tify
AT5G13220.1 JAS1/JAZ10/TIFY9 (JASMONATE-ZIM-DOMAIN PROTEIN 10) CCT_2 tify
AT5G13220.2 JAS1/JAZ10/TIFY9 (JASMONATE-ZIM-DOMAIN PROTEIN 10) CCT_2 tify
AT5G13220.3 JAS1/JAZ10/TIFY9 (JASMONATE-ZIM-DOMAIN PROTEIN 10) CCT_2 tify
AT5G20900.1 JAZ12/TIFY3B (JASMONATE-ZIM-DOMAIN PROTEIN 12) CCT_2 tify

General references

Nishii, A; Takemura, M; Fujita, H; Shikata, M; Yokota, A; Kohchi, T. 2000. Characterization of a novel gene encoding a putative single zinc-finger protein, ZIM, expressed during the reproductive phase in Arabidopsis thaliana. Biosci. Biotechnol. Biochem. 64(7):1402-9 PUBMEDID:10945256
Vanholme, B; Grunewald, W; Bateman, A; Kohchi, T; Gheysen, G. 2007. The tify family previously known as ZIM. Trends Plant Sci. 12(6):239-44 PUBMEDID:17499004

Specific references

Shikata, M; Matsuda, Y; Ando, K; Nishii, A; Takemura, M; Yokota, A; Kohchi, T. 2004. Characterization of Arabidopsis ZIM, a member of a novel plant-specific GATA factor gene family. J. Exp. Bot. 55(397):631-9 PUBMEDID:14966217
Shikata, M; Takemura, M; Yokota, A; Kohchi, T. 2003. Arabidopsis ZIM, a plant-specific GATA factor, can function as a transcriptional activator. Biosci. Biotechnol. Biochem. 67(11):2495-7 PUBMEDID:14646219