Plant Transcription factor database - Universität Potsdam
version: 3.0

Zea mays Tify Family

Description

Nishii et al. 2000: By differential screening of an arrayed normalized cDNA library from the inflorescence apex in Arabidopsis, a cDNA clone having a deduced amino acid sequence with a motif for a zinc finger was isolated as one of the genes expressed specifically in the reproductive phase. The deduced protein has a modular structure with a putative single C2-C2 zinc-finger motif distantly related to a GATA-1-type finger, a basic region with a sequence resembling a nuclear localization signal, and an acidic region. The gene seemed to have been formed by the exon-shuffling during its molecular evolution, since individual domains are encoded by discrete exons. RNA gel blot analysis showed its expression in shoot apex and flowers in the reproductive phase. The gene was named ZIM for Zinc-finger protein expressed in Inflorescence Meristem. The nuclear localization of ZIM was detected using GFP as a reporter. These results suggest that ZIM is a putative transcription factor involved in inflorescence and flower development.

Members of this family
  SHOULD possess tify domain
  SHOULD NOT possess GATA domain

Domain alignments

This family is also present in:

References

There are 60 gene models in this family



Gene modelDescriptionDomains
AC190838.3_FGP043 CCT_2 tify
AC194381.3_FGP030 CCT_2 tify
AC196795.4_FGP057 CCT_2 tify
AC197764.4_FGP039 CCT_2 tify
AC225818.2_FGP031 CCT_2 tify
GRMZM2G003227_P01 CCT_2 tify
GRMZM2G005954_P01 CCT_2 tify
GRMZM2G005954_P02 CCT_2 tify
GRMZM2G008222_P01 CCT_2 LSM tify
GRMZM2G010999_P01 CCT_2 tify
GRMZM2G017219_P01 CCT_2 tify
GRMZM2G018219_P01 CCT_2 tify
GRMZM2G019526_P01 CCT_2 tify
GRMZM2G019526_P02 CCT_2 tify
GRMZM2G023701_P01 CCT_2 tify
GRMZM2G024680_P01 CCT_2 tify
GRMZM2G027807_P01 CCT_2 PPR Peptidase_C48 tify
GRMZM2G034252_P01 LSM tify
GRMZM2G035621_P01 CCT_2 tify
GRMZM2G036288_P01 CCT_2 tify
GRMZM2G036351_P01 CCT_2 tify
GRMZM2G042708_P01 CCT_2 tify
GRMZM2G042778_P01 CCT_2 tify
GRMZM2G042778_P02 CCT_2 tify
GRMZM2G054689_P01 CCT_2 tify
GRMZM2G058529_P01 tify
GRMZM2G058529_P02 CCT_2 tify
GRMZM2G058529_P03 CCT_2 tify
GRMZM2G063632_P01 CCT_2 tify
GRMZM2G064775_P01 CCT_2 tify
GRMZM2G066020_P01 CCT_2 tify
GRMZM2G073122_P01 CCT_2 tify
GRMZM2G086920_P01 CCT_2 tify
GRMZM2G086920_P02 CCT_2 tify
GRMZM2G088049_P01 CCT_2 tify
GRMZM2G089736_P01 CCT_2 tify
GRMZM2G101769_P01 CCT_2 tify
GRMZM2G103469_P01 CCT_2 tify
GRMZM2G110131_P02 tify
GRMZM2G116614_P01 CCT_2 tify
GRMZM2G117513_P01 CCT_2 tify
GRMZM2G119744_P01 tify
GRMZM2G122160_P02 tify
GRMZM2G126507_P01 CCT_2 tify
GRMZM2G126507_P02 CCT_2 tify
GRMZM2G142503_P01 tify
GRMZM2G143402_P01 CCT_2 tify
GRMZM2G143402_P02 CCT_2 tify
GRMZM2G143402_P03 CCT_2 tify
GRMZM2G145407_P01 CCT_2 tify
GRMZM2G145412_P01 CCT_2 tify
GRMZM2G145458_P01 CCT_2 tify
GRMZM2G147936_P01 CCT_2 tify
GRMZM2G148957_P01 CCT_2 tify
GRMZM2G151519_P01 CCT_2 tify
GRMZM2G151519_P02 CCT_2 tify
GRMZM2G159293_P01 CCT_2 tify
GRMZM2G165592_P01 CCT_2 tify
GRMZM2G171830_P01 CCT_2 tify
GRMZM2G173596_P01 CCT_2 tify

General references

Nishii, A; Takemura, M; Fujita, H; Shikata, M; Yokota, A; Kohchi, T. 2000. Characterization of a novel gene encoding a putative single zinc-finger protein, ZIM, expressed during the reproductive phase in Arabidopsis thaliana. Biosci. Biotechnol. Biochem. 64(7):1402-9 PUBMEDID:10945256
Vanholme, B; Grunewald, W; Bateman, A; Kohchi, T; Gheysen, G. 2007. The tify family previously known as ZIM. Trends Plant Sci. 12(6):239-44 PUBMEDID:17499004