Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis lyrata bZIP Family

Description

Jakoby et al. 2002: In plants, basic region/leucine zipper motif (bZIP) transcription factors regulate processes including pathogen defence, light and stress signalling, seed maturation and flower development.

Members of this family
  SHOULD possess bZIP_1 bZIP_2 bZIP_Maf domains
  SHOULD NOT possess HLH domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Jakoby et al. 2002 for A. thaliana were taken as gold standard.

The gold standard reported 74 members for this family, 68 of which are present in ArabTFDB, giving a PPV of 0.97. Six additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.92.

This family is also present in:

References

There are 76 gene models in this family



Gene modelDescriptionDomains
311885 fgenesh1_pm.C_scaffold_1000665 Arm bZIP_2
312884 fgenesh1_pm.C_scaffold_1001664 bZIP_1
321332 fgenesh1_pm.C_scaffold_4001389 bZIP_1 bZIP_2
322281 fgenesh1_pm.C_scaffold_4002338 MFMR bZIP_1 bZIP_2
324178 fgenesh1_pm.C_scaffold_5001722 bZIP_1 bZIP_2
342995 fgenesh1_pg.C_scaffold_3002758 bZIP_1 bZIP_2
343397 fgenesh1_pg.C_scaffold_3003160 bZIP_1 bZIP_2
470374 fgenesh2_kg.1__328__AT1G03970.1 bZIP_1 bZIP_2
473396 fgenesh2_kg.1__3350__AT1G32150.1 MFMR bZIP_1 bZIP_2
473749 fgenesh2_kg.1__3703__AT1G42990.1 bZIP_1 bZIP_2
473775 fgenesh2_kg.1__3729__AT1G43700.1 bZIP_1 bZIP_2
473850 fgenesh2_kg.1__3804__AT1G45249.1 bZIP_1 bZIP_2
474101 fgenesh2_kg.1__4055__AT1G49720.1 bZIP_1 bZIP_2
475358 fgenesh2_kg.2__488__AT1G59530.1 bZIP_1 bZIP_2
475990 fgenesh2_kg.2__1120__AT1G68640.1 bZIP_1 bZIP_2
476015 fgenesh2_kg.2__1145__AT1G68880.1 bZIP_1 bZIP_2
478415 fgenesh2_kg.3__1116__AT3G10800.1 bZIP_1 bZIP_2
478587 fgenesh2_kg.3__1288__AT3G12250.4 bZIP_2
479237 fgenesh2_kg.3__1938__AT3G17609.2 bZIP_1 bZIP_2
479444 fgenesh2_kg.3__2145__AT3G19290.1 bZIP_1 bZIP_2
480043 fgenesh2_kg.3__2744__AT5G60830.1 bZIP_1 bZIP_2
480722 fgenesh2_kg.3__3423__AT2G18162.1 bZIP_1 bZIP_2
480978 fgenesh2_kg.4__38__AT2G21230.1 bZIP_1 bZIP_2
482066 fgenesh2_kg.4__1126__AT2G31370.4 bZIP_1 bZIP_2
482512 fgenesh2_kg.4__1572__AT2G35530.1 MFMR bZIP_1 bZIP_2
483119 fgenesh2_kg.4__2179__AT2G40620.1 bZIP_1 bZIP_2
483175 fgenesh2_kg.4__2235__AT2G41070.2 bZIP_1 bZIP_2
483330 fgenesh2_kg.4__2390__AT2G42380.2 bZIP_1 bZIP_2
484308 fgenesh2_kg.5__300__AT2G04038.1 bZIP_1 bZIP_2
484862 fgenesh2_kg.5__854__AT3G44460.1 bZIP_1 bZIP_2
485555 fgenesh2_kg.5__1547__AT3G51960.2 bZIP_2
486262 fgenesh2_kg.5__2254__AT3G58120.1 bZIP_1 bZIP_2
486748 fgenesh2_kg.5__2740__AT3G62420.1 bZIP_1 bZIP_2
487498 fgenesh2_kg.6__632__AT5G06839.2 bZIP_2
487510 fgenesh2_kg.6__644__AT5G06950.1 bZIP_2
487514 fgenesh2_kg.6__648__AT5G06960.1 bZIP_2
487538 fgenesh2_kg.6__672__AT5G07160.1 bZIP_1 bZIP_2
487648 fgenesh2_kg.6__782__AT5G08141.1 bZIP_2
487829 fgenesh2_kg.6__963__AT5G10030.1 bZIP_1 bZIP_2
488428 fgenesh2_kg.6__1562__AT5G15830.1 bZIP_1 bZIP_2
489663 fgenesh2_kg.6__2797__AT5G28770.2 bZIP_1 bZIP_2
490295 fgenesh2_kg.6__3429__AT4G02640.2 bZIP_1 bZIP_2
491198 fgenesh2_kg.7__631__AT4G34588.1 bZIP_1 bZIP_2
491272 fgenesh2_kg.7__705__AT4G34000.1 bZIP_1 bZIP_2
494588 fgenesh2_kg.8__404__AT5G44080.1 bZIP_1 bZIP_2
495000 fgenesh2_kg.8__816__AT5G49448.1 bZIP_2
496230 fgenesh2_kg.8__2046__AT5G60830.1 bZIP_1 bZIP_2
856577 Al_scaffold_0007_76 bZIP_2
856771 Al_scaffold_0007_270 bZIP_1 bZIP_2
856954 Al_scaffold_0007_453 bZIP_1 bZIP_2
857922 Al_scaffold_0007_1421 Tryp_alpha_amyl bZIP_1 bZIP_2
864390 Al_scaffold_0006_3899 MFMR bZIP_1 bZIP_2
878856 Al_scaffold_0001_623 bZIP_1 bZIP_2
884485 Al_scaffold_0008_749 bZIP_1 bZIP_2
886806 Al_scaffold_0008_3070 bZIP_1 bZIP_2
887800 scaffold_100594.1 bZIP_1 bZIP_2
888726 scaffold_101520.1 bZIP_1 bZIP_2
892661 scaffold_105455.1 bZIP_1 bZIP_2
895409 scaffold_202483.1 bZIP_1 bZIP_2
899560 scaffold_303530.1 bZIP_2
900000 scaffold_303970.1 bZIP_2
900536 scaffold_400037.1 bZIP_1 bZIP_2
900741 scaffold_400242.1 bZIP_1 bZIP_2
903398 scaffold_402899.1 bZIP_1 bZIP_2
905328 scaffold_501032.1 bZIP_1 bZIP_2
906289 scaffold_501993.1 bZIP_1 bZIP_2
906872 scaffold_502576.1 bZIP_1 bZIP_2
907132 scaffold_502836.1 bZIP_1 bZIP_2
909087 scaffold_601144.1 bZIP_1 bZIP_2
910526 scaffold_602583.1 bZIP_1 bZIP_2
912691 scaffold_700433.1 MFMR bZIP_1 bZIP_2
912881 scaffold_700623.1 bZIP_1 bZIP_2
916437 scaffold_704179.1 bZIP_1 bZIP_2
919930 scaffold_803330.1 bZIP_2
920430 scaffold_26900003.1 bZIP_1 bZIP_2
920531 scaffold_33400002.1 bZIP_2

General references

Corrêa, LG; Riaño-Pachón, DM; Schrago, CG; dos Santos, RV; Mueller-Roeber, B; Vincentz, M. 2008. The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS ONE 3(8):e2944 PUBMEDID:18698409
Foster, R; Izawa, T; Chua, NH. 1994. Plant bZIP proteins gather at ACGT elements. FASEB J. 8(2):192-200 PUBMEDID:8119490
Hurst, HC. 1995. Transcription factors 1: bZIP proteins. Protein Profile 2(2):101-68 PUBMEDID:7780801
Landschulz, WH; Johnson, PF; McKnight, SL. 1988. The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. Science 240(4860):1759-64 PUBMEDID:3289117
Vinson, C; Acharya, A; Taparowsky, EJ. 2006. Deciphering B-ZIP transcription factor interactions in vitro and in vivo. Biochim. Biophys. Acta 1759(1-2):4-12 PUBMEDID:16580748