Plant Transcription factor database - Universität Potsdam
version: 3.0

Carica papaya bZIP Family

Description

Jakoby et al. 2002: In plants, basic region/leucine zipper motif (bZIP) transcription factors regulate processes including pathogen defence, light and stress signalling, seed maturation and flower development.

Members of this family
  SHOULD possess bZIP_1 bZIP_2 bZIP_Maf domains
  SHOULD NOT possess HLH domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Jakoby et al. 2002 for A. thaliana were taken as gold standard.

The gold standard reported 74 members for this family, 68 of which are present in ArabTFDB, giving a PPV of 0.97. Six additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.92.

This family is also present in:

References

There are 41 gene models in this family



Gene modelDescriptionDomains
evm.TU.supercontig_1.199 bZIP_1 bZIP_2
evm.TU.supercontig_100.2 bZIP_1 bZIP_2
evm.TU.supercontig_115.10 bZIP_1 bZIP_2
evm.TU.supercontig_129.73 bZIP_1 bZIP_2
evm.TU.supercontig_131.77 bZIP_1 bZIP_2
evm.TU.supercontig_142.60 bZIP_1 bZIP_2
evm.TU.supercontig_146.6 Rhomboid bZIP_1 bZIP_2 zf-RanBP
evm.TU.supercontig_150.7 bZIP_1 bZIP_2
evm.TU.supercontig_158.8 MFMR bZIP_1 bZIP_2
evm.TU.supercontig_1782.2 bZIP_1 bZIP_2
evm.TU.supercontig_18.39 bZIP_1 bZIP_2
evm.TU.supercontig_19.65 bZIP_1 bZIP_2
evm.TU.supercontig_2.281 bZIP_1 bZIP_2
evm.TU.supercontig_209.9 bZIP_1 bZIP_2
evm.TU.supercontig_21.182 bZIP_1 bZIP_2
evm.TU.supercontig_21.201 bZIP_1 bZIP_2
evm.TU.supercontig_244.3 bZIP_1 bZIP_2
evm.TU.supercontig_26.288 bZIP_2
evm.TU.supercontig_2741.2 bZIP_1 bZIP_2
evm.TU.supercontig_3.217 bZIP_1 bZIP_2
evm.TU.supercontig_32.14 bZIP_1 bZIP_2
evm.TU.supercontig_33.164 bZIP_1 bZIP_2
evm.TU.supercontig_34.217 bZIP_1 bZIP_2
evm.TU.supercontig_37.130 bZIP_1 bZIP_2
evm.TU.supercontig_438.3 bZIP_1 bZIP_2
evm.TU.supercontig_49.110 bZIP_1 bZIP_2
evm.TU.supercontig_49.26 bZIP_1 bZIP_2
evm.TU.supercontig_5.159 bZIP_2
evm.TU.supercontig_5.28 bZIP_1 bZIP_2
evm.TU.supercontig_5.47 bZIP_1
evm.TU.supercontig_52.96 bZIP_1 bZIP_2
evm.TU.supercontig_53.3 bZIP_1 bZIP_2
evm.TU.supercontig_538.1 bZIP_1 bZIP_2
evm.TU.supercontig_6.171 bZIP_1 bZIP_2
evm.TU.supercontig_62.4 bZIP_1 bZIP_2
evm.TU.supercontig_81.164 bZIP_1 bZIP_2
evm.TU.supercontig_847.1 bZIP_2
evm.TU.supercontig_85.93 bZIP_1 bZIP_2
evm.TU.supercontig_9.303 bZIP_2
evm.TU.supercontig_9.71 bZIP_1 bZIP_2
evm.TU.supercontig_92.68 bZIP_1 bZIP_2

General references

Corrêa, LG; Riaño-Pachón, DM; Schrago, CG; dos Santos, RV; Mueller-Roeber, B; Vincentz, M. 2008. The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS ONE 3(8):e2944 PUBMEDID:18698409
Foster, R; Izawa, T; Chua, NH. 1994. Plant bZIP proteins gather at ACGT elements. FASEB J. 8(2):192-200 PUBMEDID:8119490
Hurst, HC. 1995. Transcription factors 1: bZIP proteins. Protein Profile 2(2):101-68 PUBMEDID:7780801
Landschulz, WH; Johnson, PF; McKnight, SL. 1988. The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. Science 240(4860):1759-64 PUBMEDID:3289117
Vinson, C; Acharya, A; Taparowsky, EJ. 2006. Deciphering B-ZIP transcription factor interactions in vitro and in vivo. Biochim. Biophys. Acta 1759(1-2):4-12 PUBMEDID:16580748