Plant Transcription factor database - Universität Potsdam
version: 3.0

Coccomyxa sp. C-169 bZIP Family

Description

Jakoby et al. 2002: In plants, basic region/leucine zipper motif (bZIP) transcription factors regulate processes including pathogen defence, light and stress signalling, seed maturation and flower development.

Members of this family
  SHOULD possess bZIP_1 bZIP_2 bZIP_Maf domains
  SHOULD NOT possess HLH domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Jakoby et al. 2002 for A. thaliana were taken as gold standard.

The gold standard reported 74 members for this family, 68 of which are present in ArabTFDB, giving a PPV of 0.97. Six additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.92.

This family is also present in:

References

There are 16 gene models in this family



Gene modelDescriptionDomains
101960 igs.C169-scaffold_24-gm_252 bZIP_1 bZIP_2
57848 GG.C169_S02_00137 bZIP_2
58587 GG.C169_S03_00096 bZIP_1 bZIP_2
60197 GG.C169_S06_00010 bZIP_1 bZIP_2
62539 GG.C169_S11_00298 bZIP_1 bZIP_2
65155 GG.C169_S20_00144 bZIP_1 bZIP_2
68861 fgeneshCV_kg.C_scaffold_24000012 bZIP_1 bZIP_2
70793 fgeneshCV_pg.C_scaffold_1000552 bZIP_2
71719 fgeneshCV_pg.C_scaffold_3000260 bZIP_1
73052 fgeneshCV_pg.C_scaffold_6000244 bZIP_1 bZIP_2
73751 fgeneshCV_pg.C_scaffold_8000132 bZIP_1 bZIP_2
74438 fgeneshCV_pg.C_scaffold_10000241 bZIP_2
74922 fgeneshCV_pg.C_scaffold_12000127 bZIP_1 bZIP_2
75562 fgeneshCV_pg.C_scaffold_14000217 bZIP_1 bZIP_2
79196 estExt_fgeneshCV_kg.C_110047 bZIP_1 bZIP_2
79740 estExt_fgeneshCV_kg.C_170049 bZIP_1 bZIP_2

General references

Corrêa, LG; Riaño-Pachón, DM; Schrago, CG; dos Santos, RV; Mueller-Roeber, B; Vincentz, M. 2008. The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS ONE 3(8):e2944 PUBMEDID:18698409
Foster, R; Izawa, T; Chua, NH. 1994. Plant bZIP proteins gather at ACGT elements. FASEB J. 8(2):192-200 PUBMEDID:8119490
Hurst, HC. 1995. Transcription factors 1: bZIP proteins. Protein Profile 2(2):101-68 PUBMEDID:7780801
Landschulz, WH; Johnson, PF; McKnight, SL. 1988. The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. Science 240(4860):1759-64 PUBMEDID:3289117
Vinson, C; Acharya, A; Taparowsky, EJ. 2006. Deciphering B-ZIP transcription factor interactions in vitro and in vivo. Biochim. Biophys. Acta 1759(1-2):4-12 PUBMEDID:16580748