Plant Transcription factor database - Universität Potsdam
version: 3.0

Galdieria sulphuraria bZIP Family

Description

Jakoby et al. 2002: In plants, basic region/leucine zipper motif (bZIP) transcription factors regulate processes including pathogen defence, light and stress signalling, seed maturation and flower development.

Members of this family
  SHOULD possess bZIP_1 bZIP_2 bZIP_Maf domains
  SHOULD NOT possess HLH domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Jakoby et al. 2002 for A. thaliana were taken as gold standard.

The gold standard reported 74 members for this family, 68 of which are present in ArabTFDB, giving a PPV of 0.97. Six additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.92.

This family is also present in:

References

There are 20 gene models in this family



Gene modelDescriptionDomains
Gs04280.1 gb|AAO22523.1|__HY5 [Brassica rapa subsp. pekinensis] bZIP_1 bZIP_2
Gs07130.1 bZIP_2
Gs07140.1 bZIP_2
Gs11090.1 bZIP_2
Gs12500.1 bZIP_2
Gs12940.1 bZIP_2
Gs15020.1 bZIP_2
Gs18080.1 bZIP_2
Gs23820.1 bZIP_2
Gs26020.1 bZIP_2
Gs29020.1 bZIP_2
Gs38150.1 emb|CAO18239.1|__unnamed protein product [Vitis vinifera] bZIP_1 bZIP_2
Gs38680.1 bZIP_1 bZIP_2
Gs39020.1 bZIP_1 bZIP_2
Gs39600.1 bZIP_2
Gs42830.1 bZIP_1 bZIP_2
Gs43450.1 bZIP_1
Gs44930.1 bZIP_1
Gs51310.1 bZIP_1 bZIP_2
Gs62950.1 bZIP_2

General references

Corrêa, LG; Riaño-Pachón, DM; Schrago, CG; dos Santos, RV; Mueller-Roeber, B; Vincentz, M. 2008. The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS ONE 3(8):e2944 PUBMEDID:18698409
Foster, R; Izawa, T; Chua, NH. 1994. Plant bZIP proteins gather at ACGT elements. FASEB J. 8(2):192-200 PUBMEDID:8119490
Hurst, HC. 1995. Transcription factors 1: bZIP proteins. Protein Profile 2(2):101-68 PUBMEDID:7780801
Landschulz, WH; Johnson, PF; McKnight, SL. 1988. The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. Science 240(4860):1759-64 PUBMEDID:3289117
Vinson, C; Acharya, A; Taparowsky, EJ. 2006. Deciphering B-ZIP transcription factor interactions in vitro and in vivo. Biochim. Biophys. Acta 1759(1-2):4-12 PUBMEDID:16580748