Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. indica bZIP Family

Description

Jakoby et al. 2002: In plants, basic region/leucine zipper motif (bZIP) transcription factors regulate processes including pathogen defence, light and stress signalling, seed maturation and flower development.

Members of this family
  SHOULD possess bZIP_1 bZIP_2 bZIP_Maf domains
  SHOULD NOT possess HLH domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Jakoby et al. 2002 for A. thaliana were taken as gold standard.

The gold standard reported 74 members for this family, 68 of which are present in ArabTFDB, giving a PPV of 0.97. Six additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.92.

This family is also present in:

References

There are 89 gene models in this family



Gene modelDescriptionDomains
OsIBCD000491 Chr01_752,1155,,,1,1155, FAD_binding_6 NAD_binding_1 bZIP_1 bZIP_2
OsIBCD000496 Chr01_758,627,,,1,627, bZIP_1 bZIP_2
OsIBCD000709 Chr01_1062,996,,,1,996, bZIP_1 bZIP_2
OsIBCD001182 Chr01_1728,1161,,,1,1161, bZIP_2
OsIBCD002800 Chr01_4417,1254,,,1,1254, MFMR bZIP_1 bZIP_2
OsIBCD003345 Chr01_5194,798,,,1,798, bZIP_1 bZIP_2
OsIBCD003643 Chr01_5624,1497,,,1,1497, bZIP_2
OsIBCD003673 Chr01_5668,1449,,,1,1449, HIT bZIP_1 bZIP_2
OsIBCD003948 Chr01_6081,1125,,,1,1125, bZIP_1 bZIP_2
OsIBCD003950 Chr01_6083,1590,,,1,1590, bZIP_2
OsIBCD003985 Chr01_6157,837,,,1,837, bZIP_1 bZIP_2
OsIBCD004921 Chr02_282,1674,,,1,1674, MFMR bZIP_1 bZIP_2
OsIBCD005237 Chr02_778,837,,,1,837, bZIP_1 bZIP_2
OsIBCD005394 Chr02_984,1062,,,1,1062, bZIP_1 bZIP_2
OsIBCD005446 Chr02_1058,735,,,1,735, Lectin_legB bZIP_1 bZIP_2
OsIBCD005703 Chr02_1429,831,,,1,831, bZIP_1 bZIP_2
OsIBCD005797 Chr02_1575,897,,,1,897, bZIP_1 bZIP_2
OsIBCD008080 Chr02_5275,1083,,,1,1083, bZIP_1 bZIP_2
OsIBCD008513 Chr02_5861,465,,,1,465, bZIP_1 bZIP_2
OsIBCD008715 Chr03_257,1290,,,1,1290, bZIP_1 bZIP_2
OsIBCD009422 Chr03_1229,1152,,,1,1152, MFMR bZIP_1 bZIP_2
OsIBCD009868 Chr03_1858,951,,,1,951, bZIP_1 bZIP_2
OsIBCD009975 Chr03_2011,453,,,1,453, bZIP_1 bZIP_2
OsIBCD010067 Chr03_2132,879,,,1,879, bZIP_1 bZIP_2
OsIBCD012257 Chr03_5771,1266,,,1,1266, bZIP_1 bZIP_2
OsIBCD012363 Chr03_5901,927,,,1,927, MFMR bZIP_1 bZIP_2
OsIBCD013337 Chr04_1040,1527,,,1,1527, bZIP_2
OsIBCD015733 Chr04_4796,1068,,,1,1068, bZIP_1 bZIP_2
OsIBCD017993 Chr05_3178,1941,,,1,1941, bZIP_1 bZIP_2
OsIBCD018143 Chr05_3395,828,,,1,828, bZIP_1 bZIP_2
OsIBCD018179 Chr05_3462,1326,,,1,1326, bZIP_1 bZIP_2
OsIBCD018444 Chr05_3857,990,,,1,990, bZIP_1 bZIP_2
OsIBCD018929 Chr05_4562,1143,,,1,1143, MFMR bZIP_1 bZIP_2
OsIBCD019798 Chr06_1050,960,,,1,960, bZIP_1 bZIP_2
OsIBCD020090 Chr06_1512,1449,,,1,1449, bZIP_1 bZIP_2
OsIBCD021296 Chr06_3693,531,,,1,531, bZIP_1 bZIP_2
OsIBCD021389 Chr06_3826,480,,,1,480, bZIP_1 bZIP_2
OsIBCD021392 Chr06_3830,1197,,,1,1197, bZIP_1 bZIP_2
OsIBCD021439 Chr06_3901,1119,,,1,1119, bZIP_1 bZIP_2
OsIBCD021682 Chr06_4275,888,,,1,888, bZIP_1 bZIP_2
OsIBCD022547 Chr07_673,1311,,,1,1311, bZIP_1 bZIP_2
OsIBCD022718 Chr07_949,912,,,1,912, bZIP_1 bZIP_2
OsIBCD024362 Chr07_3803,2601,,,1,2601, bZIP_1 bZIP_2
OsIBCD024606 Chr07_4141,1095,,,1,1095, bZIP_1 bZIP_2
OsIBCD024642 Chr07_4190,822,,,1,822, bZIP_1 bZIP_2
OsIBCD024653 Chr07_4205,879,,,1,879, bZIP_2
OsIBCD025152 Chr08_688,1182,,,1,1182, bZIP_1 bZIP_2
OsIBCD026211 Chr08_2605,543,,,1,543, bZIP_1 bZIP_2
OsIBCD026828 Chr08_3664,900,,,1,900, bZIP_1 bZIP_2
OsIBCD027288 Chr08_4356,1308,,,1,1308, bZIP_1 bZIP_2
OsIBCD027289 Chr08_4357,963,,,1,963, bZIP_1 bZIP_2
OsIBCD027330 Chr08_4407,441,,,1,441, bZIP_1 bZIP_2
OsIBCD027862 Chr09_845,1428,,,1,1428, bZIP_2
OsIBCD028791 Chr09_2353,1095,,,1,1095, bZIP_1 bZIP_2
OsIBCD028956 Chr09_2633,1293,,,1,1293, bZIP_2
OsIBCD029122 Chr09_2848,1143,,,1,1143, bZIP_1 bZIP_2
OsIBCD029144 Chr09_2878,1338,,,1,1338, bZIP_2
OsIBCD029266 Chr09_3040,621,,,1,621, bZIP_1 bZIP_2
OsIBCD031787 Chr11_287,3483,,,1,3483, RRM_1 TPT bZIP_1 bZIP_2
OsIBCD031870 Chr11_415,1644,,,1,1644, bZIP_2
OsIBCD031879 Chr11_435,528,,,1,528, bZIP_1
OsIBCD031918 Chr11_500,1101,,,1,1101, bZIP_2
OsIBCD032204 Chr11_951,1728,,,1,1728, bZIP_1
OsIBCD034073 Chr12_492,1392,,,1,1392, bZIP_2
OsIBCD034091 Chr12_519,585,,,1,585, bZIP_1
OsIBCD034124 Chr12_577,999,,,1,999, bZIP_1 bZIP_2
OsIBCD034302 Chr12_837,1107,,,1,1107, bZIP_1
OsIBCD034453 Chr12_1082,1173,,,1,1173, MFMR bZIP_1 bZIP_2
OsIBCD035580 Chr12_3029,897,,,1,897, bZIP_1 bZIP_2
OsIBCD036493 Chr01_3485,549,,,1,549, bZIP_1 bZIP_2
OsIBCD036495 Chr01_3487,549,,,1,549, bZIP_1 bZIP_2
OsIBCD036932 Chr01_5577,492,,,1,492, bZIP_1 bZIP_2
OsIBCD037327 Chr02_331,492,,,1,492, bZIP_1 bZIP_2
OsIBCD037447 Chr02_950,513,,,1,513, bZIP_1 bZIP_2
OsIBCD038213 Chr02_4940,510,,,1,510, bZIP_1 bZIP_2
OsIBCD040669 Chr05_276,447,,,1,447, bZIP_1 bZIP_2
OsIBCD040670 Chr05_279,456,,,1,456, bZIP_1 bZIP_2
OsIBCD041341 Chr05_3904,672,,,1,672, bZIP_1 bZIP_2
OsIBCD042338 Chr06_3999,519,,,1,519, bZIP_1 bZIP_2
OsIBCD042496 Chr06_4768,819,,,1,819, bZIP_2
OsIBCD042565 Chr07_216,597,,,1,597, bZIP_1 bZIP_2
OsIBCD044071 Chr08_3805,693,,,1,693, bZIP_1 bZIP_2
OsIBCD044698 Chr09_2501,522,,,1,522, bZIP_1 bZIP_2
OsIBCD046398 Chr12_351,681,,,1,681, bZIP_1 bZIP_2
OsIBCD046832 Chr12_2673,438,,,1,438, bZIP_1 bZIP_2
OsIBCD046969 Chr12_3317,507,,,1,507, bZIP_1
OsIBSD047363 Supscaffold231_3,969,,,1,969, bZIP_1 bZIP_2
OsIBSD047463 Supscaffold2585_1,525,,,1,525, bZIP_1
OsIBSD047930 Supscaffold141_5,531,,,1,531, bZIP_1 bZIP_2

General references

Corrêa, LG; Riaño-Pachón, DM; Schrago, CG; dos Santos, RV; Mueller-Roeber, B; Vincentz, M. 2008. The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS ONE 3(8):e2944 PUBMEDID:18698409
Foster, R; Izawa, T; Chua, NH. 1994. Plant bZIP proteins gather at ACGT elements. FASEB J. 8(2):192-200 PUBMEDID:8119490
Hurst, HC. 1995. Transcription factors 1: bZIP proteins. Protein Profile 2(2):101-68 PUBMEDID:7780801
Landschulz, WH; Johnson, PF; McKnight, SL. 1988. The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. Science 240(4860):1759-64 PUBMEDID:3289117
Vinson, C; Acharya, A; Taparowsky, EJ. 2006. Deciphering B-ZIP transcription factor interactions in vitro and in vivo. Biochim. Biophys. Acta 1759(1-2):4-12 PUBMEDID:16580748