Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica bZIP Family

Description

Jakoby et al. 2002: In plants, basic region/leucine zipper motif (bZIP) transcription factors regulate processes including pathogen defence, light and stress signalling, seed maturation and flower development.

Members of this family
  SHOULD possess bZIP_1 bZIP_2 bZIP_Maf domains
  SHOULD NOT possess HLH domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Jakoby et al. 2002 for A. thaliana were taken as gold standard.

The gold standard reported 74 members for this family, 68 of which are present in ArabTFDB, giving a PPV of 0.97. Six additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.92.

This family is also present in:

References

There are 129 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g07880.1 transcription factor HY5, putative, expressed bZIP_1 bZIP_2
LOC_Os01g11350.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os01g17260.1 transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os01g17260.2 transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os01g36220.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os01g46970.1 transcription factor, putative, expressed MFMR bZIP_1 bZIP_2
LOC_Os01g46970.2 transcription factor, putative, expressed MFMR bZIP_1 bZIP_2
LOC_Os01g55150.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os01g58760.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os01g59350.1 transcription factor, putative, expressed bZIP_2
LOC_Os01g59350.2 transcription factor, putative, expressed bZIP_2
LOC_Os01g59760.1 bZIP transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os01g64000.1 bZIP transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os01g64000.2 bZIP transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os01g64000.3 bZIP transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os01g64020.1 transcription factor, putative, expressed bZIP_2
LOC_Os01g64020.2 transcription factor, putative, expressed bZIP_2
LOC_Os01g64730.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os02g03580.1 transcription factor, putative, expressed MFMR bZIP_1 bZIP_2
LOC_Os02g03580.3 transcription factor, putative, expressed MFMR bZIP_1 bZIP_2
LOC_Os02g03960.1 CPuORF1 - conserved peptide uORF-containing transcript, expressed bZIP_1 bZIP_2
LOC_Os02g07840.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os02g07840.2 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os02g09830.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os02g10140.1 bZIP transcription factor domain containing protein bZIP_1 bZIP_2
LOC_Os02g10860.1 bZIP transcription factor domain containing protein Lectin_legB bZIP_1 bZIP_2
LOC_Os02g14910.1 bZIP transcription factor family protein, putative, expressed bZIP_1 bZIP_2
LOC_Os02g16680.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os02g16680.2 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os02g49560.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os02g52780.1 bZIP transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os02g52780.2 bZIP transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os02g58670.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os03g03550.1 bZIP family transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os03g13614.1 transcription factor, putative, expressed MFMR bZIP_1 bZIP_2
LOC_Os03g13614.2 transcription factor, putative, expressed MFMR bZIP_1 bZIP_2
LOC_Os03g13614.3 transcription factor, putative, expressed MFMR bZIP_1 bZIP_2
LOC_Os03g19370.1 CPuORF4 - conserved peptide uORF-containing transcript, expressed bZIP_1 bZIP_2
LOC_Os03g19375.1 expressed protein bZIP_1 bZIP_2
LOC_Os03g20650.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os03g21800.1 bZIP transcription factor family protein, putative, expressed bZIP_1 bZIP_2
LOC_Os03g21800.2 bZIP transcription factor family protein, putative, expressed bZIP_1 bZIP_2
LOC_Os03g47200.1 bZIP transcription factor domain containing protein bZIP_1 bZIP_2
LOC_Os03g56010.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os03g58250.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os03g59460.1 transcription factor, putative MFMR bZIP_1 bZIP_2
LOC_Os04g10260.1 basic region leucine zipper domain containing protein bZIP_2
LOC_Os04g41820.1 transcription factor RF2a, putative bZIP_1 bZIP_2
LOC_Os04g54474.1 transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os04g54474.2 transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os04g54474.3 transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os05g03860.1 CPuORF3 - conserved peptide uORF-containing transcript, expressed bZIP_1 bZIP_2
LOC_Os05g03865.1 expressed protein bZIP_1 bZIP_2
LOC_Os05g34050.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os05g36160.1 G-box-binding factor 4, putative, expressed bZIP_1 bZIP_2
LOC_Os05g36160.2 G-box-binding factor 4, putative, expressed bZIP_1 bZIP_2
LOC_Os05g37170.1 transcription factor, putative, expressed bZIP_2
LOC_Os05g37170.2 transcription factor, putative, expressed bZIP_2
LOC_Os05g37170.3 transcription factor, putative, expressed bZIP_2
LOC_Os05g37170.4 transcription factor, putative, expressed bZIP_2
LOC_Os05g37170.5 transcription factor, putative, expressed bZIP_2
LOC_Os05g37170.6 transcription factor, putative, expressed bZIP_2
LOC_Os05g37170.8 transcription factor, putative, expressed bZIP_2
LOC_Os05g41070.1 bZIP transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os05g41540.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os05g49420.1 transcription factor, putative, expressed MFMR bZIP_1 bZIP_2
LOC_Os06g10880.1 bZIP transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os06g10880.2 bZIP transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os06g10880.3 bZIP transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os06g15480.1 transcription factor, putative, expressed bZIP_2
LOC_Os06g15480.2 transcription factor, putative, expressed bZIP_2
LOC_Os06g39960.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os06g41100.1 transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os06g41770.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os06g42690.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os06g45140.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os06g45140.2 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os06g45140.3 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os06g50310.1 E2F-related protein, putative, expressed bZIP_2
LOC_Os06g50480.1 bZIP transcription factor domain containing protein bZIP_1 bZIP_2
LOC_Os06g50600.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os06g50600.2 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os06g50830.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os07g03220.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os07g08420.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os07g10890.1 transcription factor, putative, expressed MFMR bZIP_1 bZIP_2
LOC_Os07g10890.2 transcription factor, putative, expressed MFMR bZIP_1 bZIP_2
LOC_Os07g44950.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os07g48180.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os07g48660.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os07g48820.1 transcription factor, putative, expressed bZIP_2
LOC_Os07g48820.2 transcription factor, putative, expressed bZIP_2
LOC_Os08g07970.1 transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os08g07970.2 transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os08g07970.3 transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os08g26880.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os08g36790.1 bZIP transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os08g38020.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os08g43090.1 bZIP family transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os08g43600.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os09g10840.1 transcription factor, putative, expressed bZIP_2
LOC_Os09g10840.2 transcription factor, putative, expressed bZIP_2
LOC_Os09g13570.1 CPuORF2 - conserved peptide uORF-containing transcript, expressed bZIP_1 bZIP_2
LOC_Os09g13575.1 hypothetical protein bZIP_1 bZIP_2
LOC_Os09g28310.1 bZIP transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os09g29820.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os09g31390.1 transcription factor, putative, expressed bZIP_2
LOC_Os09g31390.2 transcription factor, putative, expressed bZIP_2
LOC_Os09g31390.3 transcription factor, putative, expressed bZIP_2
LOC_Os09g34060.1 transcription factor RF2a, putative, expressed bZIP_1 bZIP_2
LOC_Os09g34880.1 basic region leucine zipper domain containing protein, expressed bZIP_2
LOC_Os09g36910.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os10g38820.1 bZIP family transcription factor, putative, expressed bZIP_1 bZIP_2
LOC_Os11g05480.1 transcription factor, putative, expressed bZIP_2
LOC_Os11g05640.1 bZIP transcription factor domain containing protein, expressed bZIP_1
LOC_Os11g06170.1 bZIP transcriptional activator RSG, putative, expressed bZIP_2
LOC_Os11g06170.2 bZIP transcriptional activator RSG, putative, expressed bZIP_1 bZIP_2
LOC_Os11g11100.1 bZIP transcription factor domain containing protein, expressed bZIP_1
LOC_Os12g05680.1 transcription factor, putative, expressed bZIP_2
LOC_Os12g06520.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os12g09250.1 bZIP transcription factor domain containing protein, expressed bZIP_1
LOC_Os12g13170.1 transcription factor, putative, expressed MFMR bZIP_1 bZIP_2
LOC_Os12g13170.2 transcription factor, putative, expressed MFMR bZIP_1 bZIP_2
LOC_Os12g37410.1 CPuORF5 - conserved peptide uORF-containing transcript, expressed bZIP_1 bZIP_2
LOC_Os12g37415.1 expressed protein bZIP_1 bZIP_2
LOC_Os12g40920.1 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os12g40920.3 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os12g40920.4 bZIP transcription factor domain containing protein, expressed bZIP_1 bZIP_2
LOC_Os12g43790.1 bZIP transcription factor domain containing protein, expressed bZIP_1

General references

Corrêa, LG; Riaño-Pachón, DM; Schrago, CG; dos Santos, RV; Mueller-Roeber, B; Vincentz, M. 2008. The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS ONE 3(8):e2944 PUBMEDID:18698409
Foster, R; Izawa, T; Chua, NH. 1994. Plant bZIP proteins gather at ACGT elements. FASEB J. 8(2):192-200 PUBMEDID:8119490
Hurst, HC. 1995. Transcription factors 1: bZIP proteins. Protein Profile 2(2):101-68 PUBMEDID:7780801
Landschulz, WH; Johnson, PF; McKnight, SL. 1988. The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. Science 240(4860):1759-64 PUBMEDID:3289117
Vinson, C; Acharya, A; Taparowsky, EJ. 2006. Deciphering B-ZIP transcription factor interactions in vitro and in vivo. Biochim. Biophys. Acta 1759(1-2):4-12 PUBMEDID:16580748

Specific references

Dai, S; Petruccelli, S; Ordiz, MI; Zhang, Z; Chen, S; Beachy, RN. 2003. Functional analysis of RF2a, a rice transcription factor. J. Biol. Chem. 278(38):36396-402 PUBMEDID:12855676
Hobo, T; Kowyama, Y; Hattori, T. 1999. A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription. Proc. Natl. Acad. Sci. U.S.A. 96(26):15348-53 PUBMEDID:10611387
Yang, D; Wu, L; Hwang, YS; Chen, L; Huang, N. 2001. Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A. 98(20):11438-43 PUBMEDID:11572990
Yin, Y; Zhu, Q; Dai, S; Lamb, C; Beachy, RN. 1997. RF2a, a bZIP transcriptional activator of the phloem-specific rice tungro bacilliform virus promoter, functions in vascular development. EMBO J. 16(17):5247-59 PUBMEDID:9311985