Plant Transcription factor database - Universität Potsdam
version: 3.0

Physcomitrella patens bZIP Family

Description

Jakoby et al. 2002: In plants, basic region/leucine zipper motif (bZIP) transcription factors regulate processes including pathogen defence, light and stress signalling, seed maturation and flower development.

Members of this family
  SHOULD possess bZIP_1 bZIP_2 bZIP_Maf domains
  SHOULD NOT possess HLH domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Jakoby et al. 2002 for A. thaliana were taken as gold standard.

The gold standard reported 74 members for this family, 68 of which are present in ArabTFDB, giving a PPV of 0.97. Six additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.92.

This family is also present in:

References

There are 37 gene models in this family



Gene modelDescriptionDomains
117402 e_gw1.20.99.1 bZIP_1 bZIP_2
118557 e_gw1.25.198.1 bZIP_1 bZIP_2
128606 e_gw1.71.145.1 bZIP_1 bZIP_2
130041 e_gw1.80.85.1 bZIP_1 bZIP_2
147335 e_gw1.258.57.1 bZIP_1
158848 estExt_fgenesh1_pg.C_70122 bZIP_1 bZIP_2
159871 estExt_fgenesh1_pg.C_160081 bZIP_1 bZIP_2
160508 estExt_fgenesh1_pg.C_220219 bZIP_1 bZIP_2
162038 estExt_fgenesh1_pg.C_380157 bZIP_1 bZIP_2
162859 estExt_fgenesh1_pg.C_480064 bZIP_1 bZIP_2
163915 estExt_fgenesh1_pg.C_620041 bZIP_1 bZIP_2
164333 estExt_fgenesh1_pg.C_680024 bZIP_1 bZIP_2
167567 estExt_fgenesh1_pg.C_1500076 bZIP_1
169374 estExt_fgenesh1_pg.C_2060068 bZIP_1 bZIP_2
171242 estExt_fgenesh1_pg.C_2820001 bZIP_1 bZIP_2
173352 estExt_fgenesh1_pg.C_4470010 bZIP_1 bZIP_2
176895 estExt_gwp_gw1.C_200078 bZIP_1 bZIP_2
188998 estExt_gwp_gw1.C_1260170 bZIP_1
18955 gw1.83.117.1 bZIP_1 bZIP_2
19389 gw1.158.68.1 bZIP_1 bZIP_2
201072 estExt_gwp_gw1.C_5120003 bZIP_1 bZIP_2
213225 estExt_Genewise1.C_870079 bZIP_1 bZIP_2
221106 estExt_Genewise1.C_2060077 bZIP_1 bZIP_2
234620 estExt_fgenesh2_pg.C_1470033 bZIP_1 bZIP_2
26362 gw1.34.187.1 bZIP_1 bZIP_2
29816 gw1.27.125.1 bZIP_1 bZIP_2
29817 gw1.3.298.1 bZIP_1 bZIP_2
29822 gw1.33.173.1 bZIP_1 bZIP_2
37500 gw1.158.108.1 bZIP_1 bZIP_2
45185 gw1.20.225.1 bZIP_1 bZIP_2
49833 gw1.189.102.1 bZIP_1 bZIP_2
49838 gw1.213.115.1 bZIP_1 bZIP_2
49843 gw1.220.60.1 bZIP_1 bZIP_2
5299 gw1.220.22.1 bZIP_1 bZIP_2
60555 fgenesh1_pm.scaffold_257000017 bZIP_1 bZIP_2
64750 fgenesh1_pg.scaffold_3000202 bZIP_1 bZIP_2
71017 fgenesh1_pg.scaffold_30000177 bZIP_1 bZIP_2

General references

Corrêa, LG; Riaño-Pachón, DM; Schrago, CG; dos Santos, RV; Mueller-Roeber, B; Vincentz, M. 2008. The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS ONE 3(8):e2944 PUBMEDID:18698409
Foster, R; Izawa, T; Chua, NH. 1994. Plant bZIP proteins gather at ACGT elements. FASEB J. 8(2):192-200 PUBMEDID:8119490
Hurst, HC. 1995. Transcription factors 1: bZIP proteins. Protein Profile 2(2):101-68 PUBMEDID:7780801
Landschulz, WH; Johnson, PF; McKnight, SL. 1988. The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. Science 240(4860):1759-64 PUBMEDID:3289117
Vinson, C; Acharya, A; Taparowsky, EJ. 2006. Deciphering B-ZIP transcription factor interactions in vitro and in vivo. Biochim. Biophys. Acta 1759(1-2):4-12 PUBMEDID:16580748