Plant Transcription factor database - Universität Potsdam
version: 3.0

Sorghum bicolor bZIP Family

Description

Jakoby et al. 2002: In plants, basic region/leucine zipper motif (bZIP) transcription factors regulate processes including pathogen defence, light and stress signalling, seed maturation and flower development.

Members of this family
  SHOULD possess bZIP_1 bZIP_2 bZIP_Maf domains
  SHOULD NOT possess HLH domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Jakoby et al. 2002 for A. thaliana were taken as gold standard.

The gold standard reported 74 members for this family, 68 of which are present in ArabTFDB, giving a PPV of 0.97. Six additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.92.

This family is also present in:

References

There are 89 gene models in this family



Gene modelDescriptionDomains
129214 fgenesh1_pm.C_chr_8000187 bZIP_2
130099 fgenesh1_pm.C_chr_9000416 bZIP_1 bZIP_2
130454 fgenesh1_pm.C_chr_10000159 bZIP_1 bZIP_2
143623 estExt_fgenesh1_pm.C_chr_31099 bZIP_1 bZIP_2
143827 estExt_fgenesh1_pm.C_chr_31381 bZIP_2
147099 estExt_fgenesh1_kg.C_chr_10072 bZIP_1 bZIP_2
147749 estExt_fgenesh1_kg.C_chr_20140 bZIP_1 bZIP_2
148020 estExt_fgenesh1_kg.C_chr_20415 bZIP_2
148509 estExt_fgenesh1_kg.C_chr_40057 bZIP_1 bZIP_2
148874 estExt_fgenesh1_kg.C_chr_50060 bZIP_1
149312 estExt_fgenesh1_kg.C_chr_70100 bZIP_1 bZIP_2
150021 estExt_fgenesh1_kg.C_chr_100185 bZIP_1 bZIP_2
3992730 gw1.4.747.1 bZIP_1 bZIP_2
4748167 estExt_Genewise1.C_chr_27662 bZIP_1 bZIP_2
4748386 estExt_Genewise1.C_chr_28091 bZIP_1 bZIP_2
4753728 estExt_Genewise1.C_chr_39489 bZIP_1 bZIP_2
4762500 estExt_Genewise1.C_chr_67971 bZIP_2
4769042 estExt_Genewise1.C_chr_97775 MFMR bZIP_1 bZIP_2
4784098 e_gw1.1.1766.1 bZIP_1 bZIP_2
4797274 e_gw1.3.18901.1 bZIP_1 bZIP_2
4801754 e_gw1.3.2267.1 bZIP_1 bZIP_2
4804338 e_gw1.3.18358.1 bZIP_2
4854739 e_gw1.9.15699.1 bZIP_1
4871669 estExt_Genewise1Plus.C_chr_110458 MFMR bZIP_1 bZIP_2
4873575 estExt_Genewise1Plus.C_chr_21296 MFMR bZIP_1 bZIP_2
4877322 estExt_Genewise1Plus.C_chr_30425 bZIP_1 bZIP_2
4879455 estExt_Genewise1Plus.C_chr_37929 MFMR bZIP_1 bZIP_2
4882446 estExt_Genewise1Plus.C_chr_41433 bZIP_1 bZIP_2
4892222 estExt_Genewise1Plus.C_chr_80688 bZIP_1 bZIP_2
4892935 estExt_Genewise1Plus.C_chr_85678 bZIP_1 bZIP_2
4893795 estExt_Genewise1Plus.C_chr_90594 bZIP_1 bZIP_2
4964112 fgenesh1_pg.C_chr_1000714 bZIP_1 bZIP_2
4964687 fgenesh1_pg.C_chr_1001289 bZIP_2
4967208 fgenesh1_pg.C_chr_1003810 bZIP_1 bZIP_2
4970402 fgenesh1_pg.C_chr_2001718 bZIP_2
4971115 fgenesh1_pg.C_chr_2002431 bZIP_1 bZIP_2
4973352 fgenesh1_pg.C_chr_3000467 bZIP_1 bZIP_2
4976086 fgenesh1_pg.C_chr_3003201 bZIP_1 bZIP_2
4977178 fgenesh1_pg.C_chr_4000011 bZIP_1 bZIP_2
4977856 fgenesh1_pg.C_chr_4000689 bZIP_1 bZIP_2
4977953 fgenesh1_pg.C_chr_4000786 bZIP_1 bZIP_2
4987812 fgenesh1_pg.C_chr_7001902 bZIP_1 bZIP_2
4991680 fgenesh1_pg.C_chr_9001408 bZIP_1 bZIP_2
4998234 estExt_fgenesh1_pg.C_chr_13837 bZIP_1 bZIP_2
4999731 estExt_fgenesh1_pg.C_chr_21561 bZIP_1 bZIP_2
5000930 estExt_fgenesh1_pg.C_chr_23845 bZIP_1 bZIP_2
5001391 estExt_fgenesh1_pg.C_chr_30455 bZIP_1 bZIP_2
5003876 estExt_fgenesh1_pg.C_chr_40972 bZIP_1 bZIP_2
5005323 estExt_fgenesh1_pg.C_chr_50431 bZIP_1 bZIP_2
5008621 estExt_fgenesh1_pg.C_chr_80849 MFMR bZIP_1 bZIP_2
5009744 estExt_fgenesh1_pg.C_chr_91565 bZIP_2
5011155 estExt_fgenesh1_pg.C_chr_102003 bZIP_1 bZIP_2
5011183 estExt_fgenesh1_pg.C_chr_102069 bZIP_2
5011519 estExt_fgenesh1_pg.C_chr_102694 bZIP_2
5029668 Sb01g030770 bZIP_1 bZIP_2
5030568 Sb01g048710 bZIP_1 bZIP_2
5031287 Sb10g009592 bZIP_1 bZIP_2
5031887 Sb10g023420 bZIP_1 bZIP_2
5032489 Sb02g001970 bZIP_1
5032652 Sb02g004590 bZIP_1 bZIP_2
5032654 Sb02g004610 bZIP_1 bZIP_2
5034157 Sb02g030170 bZIP_1 bZIP_2
5034208 Sb02g031340 bZIP_1 bZIP_2
5034893 Sb02g043620 bZIP_1 bZIP_2
5036019 Sb03g024260 bZIP_1 bZIP_2
5037479 Sb04g002360 MFMR bZIP_1 bZIP_2
5038820 Sb04g029210 bZIP_1 bZIP_2
5039293 Sb04g038600 bZIP_1 bZIP_2
5039550 Sb05g003420 bZIP_1
5042407 Sb06g026410 bZIP_1 bZIP_2
5043880 Sb07g022965 bZIP_1 bZIP_2
5043999 Sb07g024850 bZIP_1 bZIP_2
5044027 Sb07g025270 bZIP_1 bZIP_2
5044263 Sb07g028900 bZIP_1 bZIP_2
5044269 Sb07g028960 bZIP_1 bZIP_2
5044531 Sb08g003500 bZIP_1
5046629 Sb09g021580 bZIP_1 bZIP_2
5051465 Sb02g029870 bZIP_1 bZIP_2
5052247 Sb02g042990 bZIP_1 bZIP_2
5054084 Sb03g040970 bZIP_1 bZIP_2
5054835 Sb04g006400 bZIP_2
5055942 Sb04g034190 bZIP_1 bZIP_2
5057443 Sb06g021350 bZIP_1 bZIP_2
5058467 Sb07g004900 bZIP_1 bZIP_2
5059359 Sb08g003940 bZIP_1 bZIP_2
5059771 Sb08g020600 bZIP_1 bZIP_2
5060731 Sb09g024290 bZIP_1 bZIP_2
5062056 Sb10g026450 bZIP_1 bZIP_2
5062296 Sb10g030400 bZIP_1 bZIP_2

General references

Corrêa, LG; Riaño-Pachón, DM; Schrago, CG; dos Santos, RV; Mueller-Roeber, B; Vincentz, M. 2008. The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS ONE 3(8):e2944 PUBMEDID:18698409
Foster, R; Izawa, T; Chua, NH. 1994. Plant bZIP proteins gather at ACGT elements. FASEB J. 8(2):192-200 PUBMEDID:8119490
Hurst, HC. 1995. Transcription factors 1: bZIP proteins. Protein Profile 2(2):101-68 PUBMEDID:7780801
Landschulz, WH; Johnson, PF; McKnight, SL. 1988. The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. Science 240(4860):1759-64 PUBMEDID:3289117
Vinson, C; Acharya, A; Taparowsky, EJ. 2006. Deciphering B-ZIP transcription factor interactions in vitro and in vivo. Biochim. Biophys. Acta 1759(1-2):4-12 PUBMEDID:16580748