Plant Transcription factor database - Universität Potsdam
version: 3.0

Selaginella moellendorffii bZIP Family

Description

Jakoby et al. 2002: In plants, basic region/leucine zipper motif (bZIP) transcription factors regulate processes including pathogen defence, light and stress signalling, seed maturation and flower development.

Members of this family
  SHOULD possess bZIP_1 bZIP_2 bZIP_Maf domains
  SHOULD NOT possess HLH domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Jakoby et al. 2002 for A. thaliana were taken as gold standard.

The gold standard reported 74 members for this family, 68 of which are present in ArabTFDB, giving a PPV of 0.97. Six additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.92.

This family is also present in:

References

There are 22 gene models in this family



Gene modelDescriptionDomains
125734 e_gw1.80.138.1 bZIP_1 bZIP_2
135978 e_gw1.142.107.1 bZIP_1 bZIP_2
17886 gw1.51.176.1 bZIP_1 bZIP_2
231160 fgenesh1_pm.C_scaffold_10000065 bZIP_1 bZIP_2
231344 fgenesh1_pm.C_scaffold_12000074 bZIP_1 bZIP_2
266892 estExt_fgenesh1_pm.C_50157 bZIP_1 bZIP_2
270282 estExt_fgenesh1_kg.C_10041 bZIP_1 bZIP_2
34663 gw1.24.381.1 bZIP_1 bZIP_2
38594 gw1.13.564.1 bZIP_1 bZIP_2
39427 gw1.33.286.1 bZIP_1 bZIP_2
402651 fgenesh2_pg.C_scaffold_0000656 bZIP_2
409920 fgenesh2_pg.C_scaffold_11000303 bZIP_1 bZIP_2
413715 fgenesh2_pg.C_scaffold_21000204 bZIP_1 bZIP_2
443825 estExt_fgenesh2_pg.C_360299 bZIP_1
444176 estExt_fgenesh2_pg.C_400184 bZIP_2
444199 estExt_fgenesh2_pg.C_400234 bZIP_1 bZIP_2
67189 gw1.6.1254.1 bZIP_1 bZIP_2
73196 gw1.13.1084.1 bZIP_2
73198 gw1.43.570.1 bZIP_1 bZIP_2
77868 e_gw1.2.835.1 bZIP_1 bZIP_2
91900 e_gw1.12.823.1 bZIP_1 bZIP_2
99404 e_gw1.21.164.1 bZIP_1 bZIP_2

General references

Corrêa, LG; Riaño-Pachón, DM; Schrago, CG; dos Santos, RV; Mueller-Roeber, B; Vincentz, M. 2008. The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS ONE 3(8):e2944 PUBMEDID:18698409
Foster, R; Izawa, T; Chua, NH. 1994. Plant bZIP proteins gather at ACGT elements. FASEB J. 8(2):192-200 PUBMEDID:8119490
Hurst, HC. 1995. Transcription factors 1: bZIP proteins. Protein Profile 2(2):101-68 PUBMEDID:7780801
Landschulz, WH; Johnson, PF; McKnight, SL. 1988. The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. Science 240(4860):1759-64 PUBMEDID:3289117
Vinson, C; Acharya, A; Taparowsky, EJ. 2006. Deciphering B-ZIP transcription factor interactions in vitro and in vivo. Biochim. Biophys. Acta 1759(1-2):4-12 PUBMEDID:16580748