Plant Transcription factor database - Universität Potsdam
version: 3.0

Vitis vinifera bZIP Family

Description

Jakoby et al. 2002: In plants, basic region/leucine zipper motif (bZIP) transcription factors regulate processes including pathogen defence, light and stress signalling, seed maturation and flower development.

Members of this family
  SHOULD possess bZIP_1 bZIP_2 bZIP_Maf domains
  SHOULD NOT possess HLH domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Jakoby et al. 2002 for A. thaliana were taken as gold standard.

The gold standard reported 74 members for this family, 68 of which are present in ArabTFDB, giving a PPV of 0.97. Six additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.92.

This family is also present in:

References

There are 45 gene models in this family



Gene modelDescriptionDomains
GSVIVP00000647001 bZIP_1 bZIP_2
GSVIVP00002289001 bZIP_1 bZIP_2
GSVIVP00002670001 bZIP_1 bZIP_2
GSVIVP00002950001 bZIP_2
GSVIVP00010221001 bZIP_1 bZIP_2
GSVIVP00010288001 bZIP_1 bZIP_2
GSVIVP00011105001 bZIP_1 bZIP_2
GSVIVP00014358001 bZIP_1 bZIP_2
GSVIVP00014480001 bZIP_1 bZIP_2
GSVIVP00014657001 MFMR bZIP_1 bZIP_2
GSVIVP00014828001 bZIP_1 bZIP_2
GSVIVP00015294001 bZIP_1 bZIP_2
GSVIVP00015295001 bZIP_1 bZIP_2
GSVIVP00015666001 MFMR bZIP_1 bZIP_2
GSVIVP00017354001 bZIP_1 bZIP_2
GSVIVP00018689001 bZIP_1 bZIP_2
GSVIVP00019423001 bZIP_1 bZIP_2
GSVIVP00021183001 bZIP_1 bZIP_2
GSVIVP00021625001 bZIP_1 bZIP_2
GSVIVP00021648001 bZIP_1
GSVIVP00022607001 bZIP_1 bZIP_2
GSVIVP00023294001 bZIP_1 bZIP_2
GSVIVP00023833001 bZIP_1 bZIP_2
GSVIVP00023938001 bZIP_1 bZIP_2
GSVIVP00024984001 MFMR bZIP_1 bZIP_2
GSVIVP00025350001 bZIP_1 bZIP_2
GSVIVP00027772001 bZIP_1 bZIP_2
GSVIVP00028111001 bZIP_1 bZIP_2
GSVIVP00029442001 bZIP_1 bZIP_2
GSVIVP00030891001 bZIP_2
GSVIVP00031187001 bZIP_1 bZIP_2
GSVIVP00031514001 bZIP_1 bZIP_2
GSVIVP00031758001 bZIP_1 bZIP_2
GSVIVP00032358001 bZIP_1
GSVIVP00032620001 bZIP_1 bZIP_2
GSVIVP00033126001 bZIP_1 bZIP_2
GSVIVP00033430001 bZIP_1 bZIP_2
GSVIVP00035977001 bZIP_1 bZIP_2
GSVIVP00036120001 bZIP_2
GSVIVP00036338001 bZIP_1 bZIP_2
GSVIVP00036604001 bZIP_1 bZIP_2
GSVIVP00036899001 bZIP_2
GSVIVP00037363001 bZIP_2
GSVIVP00037365001 bZIP_1 bZIP_2
GSVIVP00038115001 bZIP_1 bZIP_2

General references

Corrêa, LG; Riaño-Pachón, DM; Schrago, CG; dos Santos, RV; Mueller-Roeber, B; Vincentz, M. 2008. The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS ONE 3(8):e2944 PUBMEDID:18698409
Foster, R; Izawa, T; Chua, NH. 1994. Plant bZIP proteins gather at ACGT elements. FASEB J. 8(2):192-200 PUBMEDID:8119490
Hurst, HC. 1995. Transcription factors 1: bZIP proteins. Protein Profile 2(2):101-68 PUBMEDID:7780801
Landschulz, WH; Johnson, PF; McKnight, SL. 1988. The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. Science 240(4860):1759-64 PUBMEDID:3289117
Vinson, C; Acharya, A; Taparowsky, EJ. 2006. Deciphering B-ZIP transcription factor interactions in vitro and in vivo. Biochim. Biophys. Acta 1759(1-2):4-12 PUBMEDID:16580748