Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 100150

Identification

Species:
Micromonas sp. RCC299
Gene model
100150
Description
fgenesh2_pg.C_Chr_04000345
Family
Sigma70-like
3D structure (top 5)
1L0O 1L9Z 2A6H 1RP3 1SIG
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470915 Score: 1

Arabidopsis thaliana

AT1G08540.1 Score: 1

Cyanidioschyzon merolae

CMR165C Score: 1

Carica papaya

evm.TU.supercontig_56.12 Score: 1

Coccomyxa sp. C-169

18553 Score: 1

Micromonas pusilla CCMP1545

47508 Score: 1

Ostreococcus lucimarinus

41331 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g16430.1 Score: 1.012
LOC_Os03g16430.2 Score: 1
LOC_Os11g26160.1 Score: 1

Ostreococcus tauri

18021 Score: 1

Physcomitrella patens

206687 Score: 1

Populus trichocarpa

780378 Score: 1

Sorghum bicolor

4779347 Score: 1

Selaginella moellendorffii

53596 Score: 1

Vitis vinifera

GSVIVP00013881001 Score: 1

Zea mays

GRMZM2G143392_P01 Score: 1

Expression data

Expressed Sequence Tags

Ppa.1
Physcomitrella patens Sig2 mRNA for PpSIG2, complete cds /cds=p(236,1975) /gb=AB046872
Ppa.18172
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_160930) mRNA, complete cds /cds=p(243,2018) /gb=XM_001757423

Domain Architecture

Sigma70_r1_2 PF00140 100150
DomainStartEndBit scoreE-value
Sigma70_r1_226930555.32.3e-13
Sigma70_r234941998.32.6e-26
Sigma70_r342350472.21.9e-18
Sigma70_r4520573105.81.4e-28

Sequences