Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 106616

Identification

Species:
Physcomitrella patens
Gene model
106616
Description
estExt_fgenesh1_pm.C_870014
Family
TRAF
3D structure (top 5)
2Z6G 1Y2A 2JDQ 2Z6H 1JDH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

488817 Score: 1

Arabidopsis thaliana

AT5G19330.1 Score: 1

Chlorella sp. NC64A

134999 Score: 1

Carica papaya

evm.TU.supercontig_147.26 Score: 1

Chlamydomonas reinhardtii

398723 Score: 1

Coccomyxa sp. C-169

81096 Score: 1

Micromonas pusilla CCMP1545

29724 Score: 1

Micromonas sp. RCC299

66240 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g33050.1 Score: 1

Populus trichocarpa

419382 Score: 1

Sorghum bicolor

5060460 Score: 1

Selaginella moellendorffii

164824 Score: 1

Vitis vinifera

GSVIVP00023713001 Score: 1

Expression data

Expressed Sequence Tags

At.20128
Arabidopsis thaliana armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein (AT5G19330) mRNA, complete cds /cds=p(58,2190) /gb=NM_180521
At.28791
Arabidopsis thaliana unknown protein (At5g13060) mRNA, partial cds /cds=p(1,2211) /gb=AY074524
Cre.19064
Chlamydomonas reinhardtii predicted protein (CHLREDRAFT_140706) mRNA, partial cds /cds=p(1,1923) /gb=XM_001703649
Mtr.12877
AC0646 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY615563
Mtr.13209
AC0629 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY615546
Os.7606
Oryza sativa (japonica cultivar-group) Os05g0398100 (Os05g0398100) mRNA, complete cds /cds=p(1,2259) /gb=NM_001062007
Ppa.18257
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_106616) mRNA, complete cds /cds=p(1,2088) /gb=XM_001766720
Ppa.25996
CAYY30172.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY30172 5', mRNA sequence /clone=CAYY30172 /clone_end=5' /gb=FC356489
Ppa.6194
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_106476) mRNA, complete cds /cds=p(1,2097) /gb=XM_001765868
Vvi.24033
WIN052.C21_F19 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN052_F19 3', mRNA sequence /clone=WIN052_F19 /clone_end=3' /gb=EC934792

Domain Architecture

Arm PF00514 106616
DomainStartEndBit scoreE-value
Arm125173230.0011
Arm17521542.31.7e-09
HEAT18121715.30.14
Arm21725731.14e-06
Arm25929920.80.0051
Arm301341322.2e-06
HEAT30734315.20.14
Arm34238222.30.0018
Arm45749818.70.022
BTB519627116.86.6e-32

Sequences