Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 106639

Identification

Species:
Physcomitrella patens
Gene model
106639
Description
estExt_fgenesh1_pm.C_880025
Family
HMG
3D structure (top 5)
1J46 2GZK 2CO9 1K99 2LEF
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

323737 Score: 1

Arabidopsis thaliana

AT3G51880.2 Score: 1

Carica papaya

evm.TU.supercontig_19.182 Score: 1

Sorghum bicolor

4898798 Score: 1

Vitis vinifera

GSVIVP00003430001 Score: 1

Expression data

Expressed Sequence Tags

At.480
Arabidopsis thaliana HMGB1 (HIGH MOBILITY GROUP B 1) (HMGB1) mRNA, complete cds /cds=p(152,709) /gb=NM_202684
Ppa.8113
BY949143 ppls full-length cDNA library Physcomitrella patens subsp. patens cDNA clone PPLS027B16 5', mRNA sequence /clone=PPLS027B16 /clone_end=5' /gb=BY949143
Ppa.8587
DC957328 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs24b05 3', mRNA sequence /clone=ppgs24b05 /clone_end=3' /gb=DC957328
Pth.12222
Populus trichocarpa clone WS0116_I09 unknown mRNA /cds=p(48,563) /gb=EF146251
Pth.16795
V048F01.5pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V048F01 5', mRNA sequence /clone=V048F01 /clone_end=5' /gb=DN502064
Vvi.24274
VVI007B09_583876 CabSau Flower Stage 12 (FLOu0012) Vitis vinifera cDNA clone VVI007B09 5, mRNA sequence /clone=VVI007B09 /clone_end=5' /gb=DT017018
Vvi.2508
WIN0812.C21_N03 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0812_N03 3', mRNA sequence /clone=WIN0812_N03 /clone_end=3' /gb=EC961864
Vvi.8136
VV_PEa13e11.g1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence /gb=EV230679

Domain Architecture

HMG_box PF00505 106639
DomainStartEndBit scoreE-value
HMG_box57126101.62.4e-27

Sequences

protein sequence
transcript sequence