Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 108888

Identification

Species:
Physcomitrella patens
Gene model
108888
Description
estExt_fgenesh1_pm.C_3390006
Family
ARF
3D structure (top 5)
1WID 1YEL
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

913475 Score: 1

Arabidopsis thaliana

AT4G30080.1 Score: 1

Carica papaya

evm.TU.supercontig_53.86 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g47150.1 Score: 1
LOC_Os06g47150.2 Score: 1
LOC_Os06g47150.3 Score: 1
LOC_Os06g47150.4 Score: 0.946

Populus trichocarpa

765287 Score: 1

Sorghum bicolor

5048741 Score: 1

Selaginella moellendorffii

51695 Score: 1

Vitis vinifera

GSVIVP00024547001 Score: 1

Zea mays

GRMZM2G052055_P01 Score: 1

Expression data

Expressed Sequence Tags

Mtr.13396
EST508440 HOGA Medicago truncatula cDNA clone pHOGA-9L18 5' end, mRNA sequence /clone=pHOGA-9L18 /clone_end=5' /gb=BG646821
Os.8374
Oryza sativa Japonica Group cDNA clone:J023121F07, full insert sequence /gb=AK100795
Ppa.17357
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_148548) mRNA, partial cds /cds=p(1,1260) /gb=XM_001780373
Ppa.2724
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_108888) mRNA, complete cds /cds=p(1,1788) /gb=XM_001782698

Domain Architecture

B3 PF02362 108888
DomainStartEndBit scoreE-value
B3111216107.54.1e-29
Auxin_resp259342129.78.2e-36

Sequences