Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 123770

Identification

Species:
Sorghum bicolor
Gene model
123770
Description
fgenesh1_pm.C_chr_1000824
Family
TUB
3D structure (top 5)
2FIM 3C5N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

322431 Score: 1

Arabidopsis thaliana

AT2G47900.1 Score: 1
AT2G47900.2 Score: 1

Carica papaya

evm.TU.supercontig_9.163 Score: 1

Chlamydomonas reinhardtii

17453 Score: 1

Coccomyxa sp. C-169

25937 Score: 1

Micromonas pusilla CCMP1545

35442 Score: 1

Micromonas sp. RCC299

63330 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g22800.1 Score: 1

Physcomitrella patens

58364 Score: 1

Populus trichocarpa

820895 Score: 1

Vitis vinifera

GSVIVP00023594001 Score: 1

Zea mays

GRMZM2G081869_P02 Score: 1
GRMZM2G114736_P03 Score: 1

Expression data

Expressed Sequence Tags

At.17482
Arabidopsis thaliana AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor (AtTLP1) mRNA, complete cds /cds=p(211,1578) /gb=NM_179563
At.23717
Arabidopsis thaliana AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor (AtTLP10) mRNA, complete cds /cds=p(578,1915) /gb=NM_102338
At.27566
Arabidopsis thaliana putative tubby protein (At2g47900) mRNA, complete cds /cds=p(455,1675) /gb=AY074273
At.31402
Arabidopsis thaliana mRNA for tub family-like protein, clone: RAFL14-43-C05 /gb=AK227861
At.46725
Arabidopsis thaliana ATTLP9 (TUBBY-LIKE PROTEIN 9); phosphoric diester hydrolase/ protein binding / transcription factor (ATTLP9) mRNA, complete cds /cds=p(261,1403) /gb=NM_111513
Hv.11650
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf148o16, mRNA sequence /gb=AK252121
Os.12718
Oryza sativa Japonica Group cDNA clone:J033089L13, full insert sequence /gb=AK102298
Os.15216
Oryza sativa Japonica Group cDNA clone:J033133A18, full insert sequence /cds=p(348,1685) /gb=AK103583
Os.17428
Oryza sativa Japonica Group cDNA clone:J023042K06, full insert sequence /cds=p(797,1750) /gb=AK070139
Os.18696
Oryza sativa Japonica Group cDNA clone:J033087L15, full insert sequence /gb=AK102221
Os.19114
Oryza sativa Japonica Group cDNA clone:J013023N16, full insert sequence /gb=AK098928
Os.21061
Oryza sativa (japonica cultivar-group) Os07g0667000 (Os07g0667000) mRNA, complete cds /cds=p(247,1467) /gb=NM_001067107
Os.27120
Oryza sativa Japonica Group cDNA clone:J023001B21, full insert sequence /gb=AK120706
Os.61163
Oryza sativa Japonica Group cDNA clone:J033091L01, full insert sequence /cds=p(199,894) /gb=AK102370
Ppa.17533
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_190792) mRNA, complete cds /cds=p(1,1287) /gb=XM_001772550
Ppa.6953
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_221905) mRNA, complete cds /cds=p(1,1278) /gb=XM_001777454
Pth.11141
Populus trichocarpa clone WS01217_E07 unknown mRNA /cds=p(196,1374) /gb=EF146852
Pth.4669
Populus trichocarpa clone WS0115_J02 unknown mRNA /cds=p(226,1497) /gb=EF146106

Domain Architecture

F-box PF00646 123770
DomainStartEndBit scoreE-value
F-box4810321.10.0046
Tub114393485.85.9e-143

Sequences