Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 127229

Identification

Species:
Physcomitrella patens
Gene model
127229
Description
e_gw1.64.107.1
Family
ARF
3D structure (top 5)
1WID 1YEL
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.10488
Arabidopsis thaliana ARF19 (AUXIN RESPONSE FACTOR 11); transcription factor (ARF19) mRNA, complete cds /cds=p(309,3569) /gb=NM_101780
At.21704
Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2); transcription factor (ARF2) mRNA, complete cds /cds=p(502,3081) /gb=NM_180913
Os.18308
Oryza sativa Japonica Group cDNA clone:J013091D19, full insert sequence /cds=p(290,2812) /gb=AK067061
Os.22271
Oryza sativa Japonica Group cDNA clone:J033125G19, full insert sequence /gb=AK103312
Os.22750
Oryza sativa Japonica Group cDNA clone:J033124L19, full insert sequence /gb=AK103280
Os.25597
Oryza sativa Japonica Group cDNA clone:J023056C15, full insert sequence /cds=p(769,3495) /gb=AK070569
Os.26144
Oryza sativa Japonica Group cDNA clone:J023022C23, full insert sequence /gb=AK072309
Os.80192
Oryza sativa Japonica Group cDNA clone:J023093B04, full insert sequence /gb=AK071455
Ppa.12649
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_203442) mRNA, complete cds /cds=p(13,1209) /gb=XM_001754661
Ppa.13893
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_127416) mRNA, partial cds /cds=p(1,2628) /gb=XM_001764015
Ppa.20219
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_135391) mRNA, complete cds /cds=p(1,1236) /gb=XM_001769831
Ppa.20660
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_168019) mRNA, complete cds /cds=p(1,3312) /gb=XM_001773444
Pth.9394
Populus trichocarpa clone WS01228_B04 unknown mRNA /cds=p(12,2735) /gb=EF147132

Domain Architecture

B3 PF02362 127229
DomainStartEndBit scoreE-value
B3104209115.41.8e-31
Auxin_resp231313152.98.5e-43

Sequences