Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 130937

Identification

Species:
Physcomitrella patens
Gene model
130937
Description
e_gw1.85.139.1
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

473862 Score: 1

Arabidopsis thaliana

AT1G46264.1 Score: 1

Carica papaya

evm.TU.supercontig_55.149 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g28200.1 Score: 1

Populus trichocarpa

287051 Score: 1

Sorghum bicolor

5000270 Score: 1

Selaginella moellendorffii

92634 Score: 1

Vitis vinifera

GSVIVP00014836001 Score: 1

Zea mays

GRMZM2G074399_P01 Score: 1
GRMZM2G088242_P01 Score: 1

Expression data

Expressed Sequence Tags

At.49954
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB79ZF11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX814533
At.5365
Arabidopsis thaliana HSF4 (HEAT SHOCK FACTOR 4); DNA binding / transcription factor (HSF4) mRNA, complete cds /cds=p(484,1338) /gb=NM_119862
Mtr.8663
Medicago truncatula clone MTYFL_FM_FN_FO1G-M-13 unknown mRNA /cds=p(142,1221) /gb=BT053195
Os.27716
Oryza sativa (japonica cultivar-group) Os08g0546800 (Os08g0546800) mRNA, complete cds /cds=p(6,1856) /gb=NM_001068958
Os.50643
Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence /cds=p(96,1028) /gb=AK063952
Pba.10851
WS01226.BR_I21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_I21 5', mRNA sequence /clone=WS01226_I21 /clone_end=5' /gb=DT472578
Pth.367
Populus trichocarpa clone WS0125_K14 unknown mRNA /cds=p(145,1251) /gb=EF147879
Vvi.23635
S9B09290 Ripening Berries (VvS9) Vitis vinifera cDNA clone S9B09290, mRNA sequence /clone=S9B09290 /gb=EE101448

Domain Architecture

HSF_DNA-bind PF00447 130937
DomainStartEndBit scoreE-value
HSF_DNA-bind11219169.58.7e-48

Sequences