Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 136290

Identification

Species:
Physcomitrella patens
Gene model
136290
Description
e_gw1.127.10.1
Family
Jumonji
3D structure (top 5)
2OX0 2W2I 2YU1
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

336188 Score: 1

Arabidopsis thaliana

AT4G20400.1 Score: 1
AT4G20400.2 Score: 0.91

Cyanidioschyzon merolae

CMT461C Score: 1

Chlorella sp. NC64A

21253 Score: 1

Carica papaya

evm.TU.supercontig_50.18 Score: 1

Chlamydomonas reinhardtii

170309 Score: 1

Coccomyxa sp. C-169

27437 Score: 1

Micromonas sp. RCC299

56462 Score: 1

Ostreococcus lucimarinus

4533 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g23670.1 Score: 1

Ostreococcus tauri

10306 Score: 1

Populus trichocarpa

241426 Score: 1

Sorghum bicolor

4991161 Score: 1

Selaginella moellendorffii

170257 Score: 1

Vitis vinifera

GSVIVP00028571001 Score: 1

Zea mays

GRMZM2G061170_P01 Score: 1.005
GRMZM2G027075_P02 Score: 1.003
GRMZM2G107109_P02 Score: 1.003
GRMZM2G162582_P03 Score: 1.003
GRMZM2G174447_P01 Score: 1

Expression data

Expressed Sequence Tags

At.26858
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT1G08620) mRNA, complete cds /cds=p(1,3552) /gb=NM_100735
At.43482
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT4G20400) mRNA, complete cds /cds=p(201,3065) /gb=NM_118159
At.53035
Arabidopsis thaliana MEE27 (maternal effect embryo arrest 27); transcription factor (MEE27) mRNA, complete cds /cds=p(1,2421) /gb=NM_129041
Hv.16169
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124d14, mRNA sequence /gb=AK253132
Os.10868
Oryza sativa Japonica Group cDNA clone:J023127H13, full insert sequence /cds=p(200,3916) /gb=AK121381
Pth.16132
F057P19.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F057P19 3', mRNA sequence /clone=F057P19 /clone_end=3' /gb=CK091187
Sbi.8331
RHOH1_36_H01.b3_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_36_H01_A002 3', mRNA sequence /clone=RHOH1_36_H01_A002 /clone_end=3' /gb=CN129603 /gi=45957447

Domain Architecture

JmjN PF02375 136290
DomainStartEndBit scoreE-value
JmjN196388.32.5e-23
JmjC253369231.81.5e-66
zf-C5HC248453783.66.2e-22

Sequences