Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 137259

Identification

Species:
Physcomitrella patens
Gene model
137259
Description
e_gw1.136.54.1
Family
C3H
3D structure (top 5)
2E5G 3D2W 1X4B 2FY1 2DGS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

485672 Score: 1

Arabidopsis thaliana

AT2G05160.1 Score: 1

Carica papaya

evm.TU.supercontig_211.13 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g03310.1 Score: 1
LOC_Os08g03310.2 Score: 1
LOC_Os08g03310.6 Score: 1
LOC_Os08g03310.3 Score: 0.918
LOC_Os08g03310.4 Score: 0.918
LOC_Os08g03310.5 Score: 0.91

Populus trichocarpa

732453 Score: 1

Sorghum bicolor

5034872 Score: 1
5062368 Score: 1

Vitis vinifera

GSVIVP00029141001 Score: 1

Zea mays

GRMZM2G015561_P03 Score: 1
GRMZM2G148090_P02 Score: 1
GRMZM2G015561_P02 Score: 0.954
GRMZM2G015561_P04 Score: 0.949

Expression data

Expressed Sequence Tags

Os.23145
Oryza sativa Japonica Group cDNA clone:J023082B02, full insert sequence /gb=AK111902
Ppa.22636
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_137259) mRNA, complete cds /cds=p(1,1161) /gb=XM_001771223
Ppa.22867
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_119974) mRNA, complete cds /cds=p(1,1266) /gb=XM_001758199

Domain Architecture

zf-CCCH PF00642 137259
DomainStartEndBit scoreE-value
zf-CCCH16418928.62.3e-05
RRM_130637422.90.0011

Sequences