Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 139631

Identification

Species:
Selaginella moellendorffii
Gene model
139631
Description
estExt_Genewise1.C_01157
Family
HB
3D structure (top 5)
1NK2 2E1O 2CUE 1JGG 2DMQ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G70920.1 Score: 1

Carica papaya

evm.TU.supercontig_101.25 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g04850.1 Score: 1

Populus trichocarpa

208963 Score: 1
718007 Score: 1

Selaginella moellendorffii

139631 Score: 1
6792 Score: 1

Sorghum bicolor

4153315 Score: 1
4153331 Score: 1

Selaginella moellendorffii

139631 Score: 1
6792 Score: 1

Zea mays

GRMZM2G044752_P01 Score: 1
GRMZM2G044752_P03 Score: 1

Expression data

Expressed Sequence Tags

At.21112
Arabidopsis thaliana HAT3 (homeobox-leucine zipper protein 3); transcription factor (HAT3) mRNA, complete cds /cds=p(217,1164) /gb=NM_115903
At.24419
Arabidopsis thaliana heomeobox protein (HAT4) mRNA, complete cds /cds=p(202,1056) /gb=M90394
Mtr.1441
Medicago truncatula clone MTYFD_FE_FF_FG1G-H-17 unknown mRNA /cds=p(54,866) /gb=BT052694
Mtr.1519
Medicago truncatula clone MTYF9_FA_FB_FC1G-F-12 unknown mRNA /cds=m(276,1166) /gb=BT052129
Mtr.17039
EST611139 KVKC Medicago truncatula cDNA clone pKVKC-7D9, mRNA sequence /clone=pKVKC-7D9 /gb=BQ165270
Mtr.5196
AJ498394 MTPOSE Medicago truncatula cDNA clone mt--acc955204c10, mRNA sequence /clone=mt--acc955204c10 /gb=AJ498394
Os.23861
Oryza sativa Japonica Group cDNA clone:J033110O17, full insert sequence /cds=p(140,883) /gb=AK122006
Os.80523
Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence /gb=AK241196
Pba.11168
WS02528.B21_I15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I15 3', mRNA sequence /clone=WS02528_I15 /clone_end=3' /gb=DT485554
Pba.4177
WS02553.C21_M03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_M03 3', mRNA sequence /clone=WS02553_M03 /clone_end=3' /gb=DT493223
Pba.8419
WS02526.BR_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_D19 5', mRNA sequence /clone=WS02526_D19 /clone_end=5' /gb=DT479554
Ppa.10747
Physcomitrella patens mRNA for homeobox protein PpHB4, complete cds /cds=p(328,810) /gb=AB028075
Ppa.26054
DC945664 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs8n05 3', mRNA sequence /clone=ppgs8n05 /clone_end=3' /gb=DC945664
Pth.11168
WS02528.B21_I15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I15 3', mRNA sequence /clone=WS02528_I15 /clone_end=3' /gb=DT485554
Pth.15578
Populus trichocarpa clone WS0122_O02 unknown mRNA /cds=p(72,1196) /gb=EF147352
Pth.4177
WS02553.C21_M03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_M03 3', mRNA sequence /clone=WS02553_M03 /clone_end=3' /gb=DT493223
Pth.8419
WS02526.BR_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_D19 5', mRNA sequence /clone=WS02526_D19 /clone_end=5' /gb=DT479554
Sbi.11595
GABR1_1_C05.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_1_C05_A002 5', mRNA sequence /clone=GABR1_1_C05_A002 /clone_end=5' /gb=CX612281 /gi=57811001
Vvi.17363
WIN0812.C21_C24 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0812_C24 3', mRNA sequence /clone=WIN0812_C24 /clone_end=3' /gb=EC961649
Vvi.8463
WIN061.C21_D09 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN061_D09 3', mRNA sequence /clone=WIN061_D09 /clone_end=3' /gb=EC956931

Domain Architecture

Homeobox PF00046 139631
DomainStartEndBit scoreE-value
Homeobox177160.27.9e-15
HALZ7211669.11.7e-17

Sequences