Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 143200

Identification

Species:
Sorghum bicolor
Gene model
143200
Description
estExt_fgenesh1_pm.C_chr_30521
Family
HB
3D structure (top 5)
2DMN 1B72 1MNM 1X2N 1DU6
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

472599 Score: 1

Arabidopsis thaliana

AT1G23380.1 Score: 1
AT1G23380.2 Score: 0.987

Carica papaya

evm.TU.supercontig_48.160 Score: 1

Micromonas sp. RCC299

62285 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g19694.1 Score: 1

Ostreococcus tauri

10780 Score: 1

Physcomitrella patens

145866 Score: 1

Populus trichocarpa

240362 Score: 1

Vitis vinifera

GSVIVP00022604001 Score: 1

Zea mays

GRMZM2G087741_P01 Score: 1
GRMZM2G130642_P01 Score: 1

Expression data

Expressed Sequence Tags

At.21162
A.thaliana mRNA for ATK1 protein /cds=p(97,1032) /gb=X81353
At.26286
Arabidopsis thaliana clone RAFL14-89-I21 (R20256) putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds /cds=p(160,1143) /gb=BT002930
At.28060
Arabidopsis thaliana KNAT1 (BREVIPEDICELLUS 1); transcription factor (KNAT1) mRNA, complete cds /cds=p(357,1553) /gb=NM_116884
Hv.26993
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf126d22, mRNA sequence /gb=AK248600
Mtr.121
Medicago truncatula knotted class I homeodomain KNOX mRNA, complete cds /cds=p(10,1155) /gb=AF308454
Mtr.7182
Medicago truncatula class I KNOX homeobox transcription factor (KNOX2) mRNA, partial cds /cds=p(1,868) /gb=EF128057
Os.4162
Oryza sativa Japonica Group cDNA clone:J033046I12, full insert sequence /cds=p(501,1436) /gb=AK111878
Os.4163
Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert sequence /gb=AK241312
Pth.17230
WS01223.B21_N06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01223_N06 3', mRNA sequence /clone=WS01223_N06 /clone_end=3' /gb=CV236360
Pth.3282
Populus trichocarpa clone WS01119_M04 unknown mRNA /cds=p(151,1008) /gb=EF144909
Sbi.19141
ANR1_20_E03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_20_E03_A002 3', mRNA sequence /clone=ANR1_20_E03_A002 /clone_end=3' /gb=CX610679 /gi=57809399
Vvi.20404
VV_PEd05f05.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV242359
Vvi.8600
WIN027.TB24.1_E07 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_E07 3', mRNA sequence /clone=WIN027_E07 /clone_end=3' /gb=EC924955

Domain Architecture

KNOX1 PF03790 143200
DomainStartEndBit scoreE-value
KNOX13680891.7e-23
KNOX285136103.76.4e-28
ELK18120235.12.7e-07
Homeobox20526360.0031

Sequences