Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 143658

Identification

Species:
Sorghum bicolor
Gene model
143658
Description
estExt_fgenesh1_pm.C_chr_31144
Family
SET
3D structure (top 5)
2R3A 3F9X 2RFI 1ML9 3H6L
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

477623 Score: 1

Arabidopsis thaliana

AT3G03750.2 Score: 1

Carica papaya

evm.TU.supercontig_161.23 Score: 1

Chlamydomonas reinhardtii

145254 Score: 1

Coccomyxa sp. C-169

28546 Score: 1

Physcomitrella patens

112173 Score: 1

Populus trichocarpa

241918 Score: 1

Selaginella moellendorffii

166928 Score: 1

Vitis vinifera

GSVIVP00003847001 Score: 1

Zea mays

GRMZM2G105869_P02 Score: 1

Expression data

Expressed Sequence Tags

At.40936
Arabidopsis thaliana SET domain-containing protein (AT3G03750) mRNA, complete cds /cds=p(25,1089) /gb=NM_202483
Os.73676
CI186272 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa (japonica cultivar-group) cDNA clone 035-M063R-A12 3', mRNA sequence /clone=035-M063R-A12 /clone_end=3' /gb=CI186272
Os.91172
Oryza sativa (japonica cultivar-group) Os01g0772100 (Os01g0772100) mRNA, complete cds /cds=p(1,1581) /gb=NM_001050924

Domain Architecture

Pre-SET PF05033 143658
DomainStartEndBit scoreE-value
Pre-SET5017229.11.1e-06
SET174319124.34.1e-34

Sequences