Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 14712

Identification

Species:
Physcomitrella patens
Gene model
14712
Description
gw1.102.25.1
Family
C3H
3D structure (top 5)
1M9O 2D9N 2E5S 2RHK 2RPP
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

477525 Score: 1

Arabidopsis thaliana

AT3G02830.1 Score: 1

Carica papaya

evm.TU.supercontig_346.1 Score: 1

Chlamydomonas reinhardtii

421287 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g28270.1 Score: 1
LOC_Os11g28270.2 Score: 0.952

Populus trichocarpa

249034 Score: 1

Sorghum bicolor

5040224 Score: 1

Selaginella moellendorffii

45667 Score: 1

Vitis vinifera

GSVIVP00025101001 Score: 1

Zea mays

GRMZM2G100794_P01 Score: 1

Expression data

Expressed Sequence Tags

At.21711
Arabidopsis thaliana ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding (ZFN3) mRNA, complete cds /cds=p(375,1439) /gb=NM_203061
At.23706
Arabidopsis thaliana ZFN1 (ZINC FINGER PROTEIN 1); nucleic acid binding (ZFN1) mRNA, complete cds /cds=p(274,1467) /gb=NM_111151
Os.12914
Oryza sativa (japonica cultivar-group) Os11g0472000 (Os11g0472000) mRNA, partial cds /cds=p(291,1535) /gb=NM_001074410
Os.14912
Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence /cds=p(183,1547) /gb=AK111511
Os.19086
Oryza sativa Japonica Group cDNA clone:002-110-B05, full insert sequence /gb=AK112102
Ppa.20528
CAYY34829.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY34829 5', mRNA sequence /clone=CAYY34829 /clone_end=5' /gb=FC363526
Vvi.19281
WIN0543.C21_B18 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0543_B18 3', mRNA sequence /clone=WIN0543_B18 /clone_end=3' /gb=EC947915

Domain Architecture

zf-CCCH PF00642 14712
DomainStartEndBit scoreE-value
zf-CCCH255138.32.8e-08
zf-CCCH709639.21.5e-08
zf-CCCH11614244.73.2e-10
zf-CCCH26028644.82.9e-10
zf-CCCH306332445.5e-10

Sequences