Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 147199

Identification

Species:
Physcomitrella patens
Gene model
147199
Description
e_gw1.256.18.1
Family
MYB
3D structure (top 5)
1H89 1GV2 1H8A 1OFC 2K9N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487691 Score: 1

Arabidopsis thaliana

AT5G08520.1 Score: 1

Carica papaya

evm.TU.supercontig_138.6 Score: 1

Ostreococcus lucimarinus

8087 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g58020.1 Score: 1

Ostreococcus tauri

23487 Score: 1

Populus trichocarpa

650862 Score: 1

Sorghum bicolor

5058138 Score: 1

Selaginella moellendorffii

47768 Score: 1

Vitis vinifera

GSVIVP00002580001 Score: 1

Zea mays

GRMZM2G149958_P01 Score: 1

Expression data

Expressed Sequence Tags

At.46819
Arabidopsis thaliana myb family transcription factor (AT2G38090) mRNA, complete cds /cds=p(568,1464) /gb=NM_129365
At.68528
Arabidopsis thaliana myb family transcription factor (AT5G04760) mRNA, complete cds /cds=p(259,906) /gb=NM_120558
At.8762
Arabidopsis thaliana myb family transcription factor (AT5G08520) mRNA, complete cds /cds=p(622,1518) /gb=NM_120937
Os.15556
Oryza sativa Japonica Group cDNA clone:001-208-B07, full insert sequence /gb=AK106166
Os.18392
Oryza sativa Japonica Group cDNA clone:J013135D01, full insert sequence /cds=p(396,1343) /gb=AK068138
Pba.5711
WS02532.B21_E19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_E19 3', mRNA sequence /clone=WS02532_E19 /clone_end=3' /gb=DT486921
Pba.6236
WS02544.B21_N08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02544_N08 3', mRNA sequence /clone=WS02544_N08 /clone_end=3' /gb=DT490388
Pba.8945
WS02522.B21_B09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_B09 3', mRNA sequence /clone=WS02522_B09 /clone_end=3' /gb=DT483252
Ppa.8167
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_147199) mRNA, complete cds /cds=p(1,858) /gb=XM_001779294
Pth.5711
WS02532.B21_E19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_E19 3', mRNA sequence /clone=WS02532_E19 /clone_end=3' /gb=DT486921
Pth.6236
WS02544.B21_N08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02544_N08 3', mRNA sequence /clone=WS02544_N08 /clone_end=3' /gb=DT490388
Pth.8945
WS02522.B21_B09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_B09 3', mRNA sequence /clone=WS02522_B09 /clone_end=3' /gb=DT483252
Ptp.3737
R044H10 Populus root cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU886395
Sbi.14152
DG1_123_F11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence /gb=BE356185
Vvi.19568
WIN1138.C21_J18 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1138_J18 3', mRNA sequence /clone=WIN1138_J18 /clone_end=3' /gb=EC990110
Vvi.23727
sT7aVVM004H08026 VVM Vitis vinifera cDNA clone VVM004H08026 5' similar to emb_CAO48712.1 unnamed protein product [Vitis vinifera]. Expect = 2e-120, mRNA sequence /clone=VVM004H08026 /clone_end=5' /gb=FC062566

Domain Architecture

Myb_DNA-binding PF00249 147199
DomainStartEndBit scoreE-value
Myb_DNA-binding1362200.0087
Myb_DNA-binding12216942.71.3e-09

Sequences