Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 147812

Identification

Species:
Sorghum bicolor
Gene model
147812
Description
estExt_fgenesh1_kg.C_chr_20205
Family
HB
3D structure (top 5)
1NK2 2E1O 2DMS 2R5Y 1PUF
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

490793 Score: 1

Arabidopsis thaliana

AT4G40060.1 Score: 1

Carica papaya

evm.TU.supercontig_36.176 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g29460.1 Score: 1

Physcomitrella patens

234989 Score: 1
6570 Score: 1
6648 Score: 1

Sorghum bicolor

147812 Score: 1
4745673 Score: 1
5048886 Score: 1

Populus trichocarpa

217381 Score: 1

Vitis vinifera

GSVIVP00012167001 Score: 1

Zea mays

GRMZM2G056600_P01 Score: 1
GRMZM2G068318_P01 Score: 1

Expression data

Expressed Sequence Tags

At.19698
Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (At5g65310) mRNA, complete cds /cds=p(398,1336) /gb=AY074293
At.47815
Arabidopsis thaliana ATHB-1 (Homeobox-leucine zipper protein HAT5); transcription factor (ATHB-1) mRNA, complete cds /cds=p(370,1188) /gb=NM_111013
Os.2364
Oryza sativa Japonica Group cDNA clone:001-127-B05, full insert sequence /gb=AK105484
Os.28034
Oryza sativa Japonica Group cDNA clone:002-116-D05, full insert sequence /cds=p(495,1304) /gb=AK106818
Os.38013
Oryza sativa Japonica Group cDNA clone:J033046N04, full insert sequence /cds=p(287,1222) /gb=AK101522
Os.8598
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120C09, full insert sequence /gb=CT837674
Pba.9592
WS02549.C21_O11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_O11 3', mRNA sequence /clone=WS02549_O11 /clone_end=3' /gb=DT492190
Sbi.7425
RHOH1_19_D01.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_19_D01_A002 5', mRNA sequence /clone=RHOH1_19_D01_A002 /clone_end=5' /gb=CN126861 /gi=45952401
Vvi.17175
WIN0510.C21_K21 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0510_K21 3', mRNA sequence /clone=WIN0510_K21 /clone_end=3' /gb=EC935875

Domain Architecture

Homeobox PF00046 147812
DomainStartEndBit scoreE-value
Homeobox5110574.34.3e-19
HALZ10615076.97.6e-20

Sequences