Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 148437

Identification

Species:
Sorghum bicolor
Gene model
148437
Description
estExt_fgenesh1_kg.C_chr_30427
Family
bHLH
3D structure (top 5)
1HLO 1NKP 1NLW 2QL2 1AM9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

870571 Score: 1

Arabidopsis thaliana

AT3G56970.1 Score: 1

Carica papaya

evm.TU.supercontig_4.168 Score: 1
evm.TU.supercontig_4.171 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g72370.1 Score: 1
LOC_Os01g72370.2 Score: 1
LOC_Os01g72370.3 Score: 0.947

Populus trichocarpa

717415 Score: 1

Vitis vinifera

GSVIVP00033905001 Score: 1

Zea mays

GRMZM2G057413_P01 Score: 1
GRMZM2G155905_P01 Score: 1

Expression data

Expressed Sequence Tags

Hv.20385
Hordeum vulgare HvIRO2 mRNA for basic helix-loop-helix protein, complete cds /cds=p(302,1060) /gb=AB206536
Hv.28954
HDP05B15w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP05B15, mRNA sequence /clone=HDP05B15 /gb=EX584176
Os.88158
Oryza sativa Japonica Group cDNA clone:J033041D19, full insert sequence /gb=AK073385
Sbi.4226
RHOH1_30_D02.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_30_D02_A002 5', mRNA sequence /clone=RHOH1_30_D02_A002 /clone_end=5' /gb=CN128617 /gi=45955667

Domain Architecture

HLH PF00010 148437
DomainStartEndBit scoreE-value
HLH7112359.41.4e-14

Sequences