Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 148548

Identification

Species:
Physcomitrella patens
Gene model
148548
Description
e_gw1.279.55.1
Family
ARF
3D structure (top 5)
1WID 1YEL
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.13730
Arabidopsis thaliana ARF10 (AUXIN RESPONSE FACTOR 10); miRNA binding / transcription factor (ARF10) mRNA, complete cds /cds=p(1,2082) /gb=NM_128394
At.3365
Arabidopsis thaliana ARF16 (AUXIN RESPONSE FACTOR 16); miRNA binding / transcription factor (ARF16) mRNA, complete cds /cds=p(180,2192) /gb=NM_119154
Mtr.13396
EST508440 HOGA Medicago truncatula cDNA clone pHOGA-9L18 5' end, mRNA sequence /clone=pHOGA-9L18 /clone_end=5' /gb=BG646821
Os.22735
Oryza sativa Japonica Group cDNA clone:J023079H12, full insert sequence /cds=p(630,2732) /gb=AK100322
Os.3105
Oryza sativa Japonica Group cDNA, clone: J100090H20, full insert sequence /gb=AK318617
Os.58906
Oryza sativa (japonica cultivar-group) Os02g0628600 (Os02g0628600) mRNA, complete cds /cds=p(1,2466) /gb=NM_001054023
Os.8374
Oryza sativa Japonica Group cDNA clone:J023121F07, full insert sequence /gb=AK100795
Ppa.17357
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_148548) mRNA, partial cds /cds=p(1,1260) /gb=XM_001780373
Ppa.2724
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_108888) mRNA, complete cds /cds=p(1,1788) /gb=XM_001782698

Domain Architecture

B3 PF02362 148548
DomainStartEndBit scoreE-value
B3126231110.55.1e-30
Auxin_resp286369138.22.3e-38

Sequences