Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 148691

Identification

Species:
Sorghum bicolor
Gene model
148691
Description
estExt_fgenesh1_kg.C_chr_40248
Family
bHLH
3D structure (top 5)
1HLO 1NKP 2QL2 1AM9 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_36.187 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g52190.1 Score: 1

Zea mays

GRMZM2G008691_P03 Score: 1
GRMZM2G150935_P03 Score: 1

Expression data

Expressed Sequence Tags

At.19247
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT1G22490) mRNA, complete cds /cds=p(104,1018) /gb=NM_102098
Os.46600
Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence /gb=AK058809
Os.51109
Oryza sativa Japonica Group cDNA clone:001-030-D07, full insert sequence /gb=AK060695
Os.55338
CI274151 Oryza sativa (japonica cultivar-group) supermix Oryza sativa (japonica cultivar-group) cDNA clone 074-M191R-F07 3', mRNA sequence /clone=074-M191R-F07 /clone_end=3' /gb=CI274151
Pba.11488
WS02549.C21_O13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_O13 3', mRNA sequence /clone=WS02549_O13 /clone_end=3' /gb=DT492192
Pth.11488
WS02549.C21_O13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_O13 3', mRNA sequence /clone=WS02549_O13 /clone_end=3' /gb=DT492192
Sbi.12497
OX1_24_H08.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_24_H08_A002 5', mRNA sequence /clone=OX1_24_H08_A002 /clone_end=5' /gb=CN139911 /gi=45975562
Sbi.18745
OX1_24_H08.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_24_H08_A002 3', mRNA sequence /clone=OX1_24_H08_A002 /clone_end=3' /gb=CN139830 /gi=45975386
Vvi.15939
WIN1154.C21_D01 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1154_D01 3', mRNA sequence /clone=WIN1154_D01 /clone_end=3' /gb=EC995072
Vvi.20015
WIN0520.C21_P17 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0520_P17 3', mRNA sequence /clone=WIN0520_P17 /clone_end=3' /gb=EC940864

Domain Architecture

HLH PF00010 148691
DomainStartEndBit scoreE-value
HLH13518659.31.5e-14

Sequences