Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 148717

Identification

Species:
Sorghum bicolor
Gene model
148717
Description
estExt_fgenesh1_kg.C_chr_40274
Family
HB
3D structure (top 5)
1NK2 2E1O 2R5Y 1PUF 1ZQ3
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

477377 Score: 1

Arabidopsis thaliana

AT3G01470.1 Score: 1

Carica papaya

evm.TU.supercontig_215.3 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g49700.1 Score: 1

Vitis vinifera

GSVIVP00020757001 Score: 1

Zea mays

GRMZM2G021339_P01 Score: 1
GRMZM2G143066_P01 Score: 1

Expression data

Expressed Sequence Tags

Hv.1550
HV_CEa0018J07f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0018J07f, mRNA sequence /clone=HV_CEa0018J07f /gb=BF267675
Mtr.1376
MTYEC08TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV260809
Mtr.4475
EST647871 HOGA Medicago truncatula cDNA clone HOGA-33D17, mRNA sequence /clone=HOGA-33D17 /gb=CB895079
Os.56903
Oryza sativa Japonica Group cDNA clone:J023110A12, full insert sequence /gb=AK100634
Os.57545
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI205P01, full insert sequence /gb=CT830627
Sbi.3331
GABR1_62_E12.g2_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_62_E12_A002 5', mRNA sequence /clone=GABR1_62_E12_A002 /clone_end=5' /gb=CX622227 /gi=57821014
Vvi.4667
WIN0812.C21_D17 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0812_D17 3', mRNA sequence /clone=WIN0812_D17 /clone_end=3' /gb=EC961661

Domain Architecture

Homeobox PF00046 148717
DomainStartEndBit scoreE-value
Homeobox7813278.62.3e-20
HALZ133177722.2e-18

Sequences