Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 149329

Identification

Species:
Sorghum bicolor
Gene model
149329
Description
estExt_fgenesh1_kg.C_chr_70118
Family
HB
3D structure (top 5)
2R5Y 2DA6 1PUF 2DMT 2VI6
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os08g32080.1 Score: 1
LOC_Os08g32085.1 Score: 1

Physcomitrella patens

6198 Score: 1

Populus trichocarpa

661900 Score: 1

Zea mays

GRMZM2G122076_P01 Score: 1

Expression data

Expressed Sequence Tags

Hv.1550
HV_CEa0018J07f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0018J07f, mRNA sequence /clone=HV_CEa0018J07f /gb=BF267675
Hv.30429
HVSMEf0018I10f Hordeum vulgare seedling root EST library HVcDNA0007 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEf0018I10f, mRNA sequence /clone=HVSMEf0018I10f /gb=BF259252
Mtr.4475
EST647871 HOGA Medicago truncatula cDNA clone HOGA-33D17, mRNA sequence /clone=HOGA-33D17 /gb=CB895079
Os.52806
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112M06, full insert sequence /gb=CT837895
Os.56903
Oryza sativa Japonica Group cDNA clone:J023110A12, full insert sequence /gb=AK100634
Os.57545
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI205P01, full insert sequence /gb=CT830627
Ppa.11823
Physcomitrella patens mRNA for homeobox protein PpHB6, complete cds /cds=p(240,1277) /gb=AB028077
Pth.17274
Populus trichocarpa clone WS0125_E07 unknown mRNA /cds=p(469,1413) /gb=EF147822
Vvi.17175
WIN0510.C21_K21 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0510_K21 3', mRNA sequence /clone=WIN0510_K21 /clone_end=3' /gb=EC935875
Vvi.4667
WIN0812.C21_D17 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0812_D17 3', mRNA sequence /clone=WIN0812_D17 /clone_end=3' /gb=EC961661

Domain Architecture

Homeobox PF00046 149329
DomainStartEndBit scoreE-value
Homeobox74128761.3e-19
HALZ12917369.41.3e-17

Sequences