Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 149443

Identification

Species:
Physcomitrella patens
Gene model
149443
Description
e_gw1.297.58.1
Family
C3H
3D structure (top 5)
2RPP 3D2Q 2E5S 3D2N 1M9O
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Physcomitrella patens

141405 Score: 1
149412 Score: 0.955
149443 Score: 0.955

Chlorella sp. NC64A

16757 Score: 1

Physcomitrella patens

141405 Score: 1
149412 Score: 1
149443 Score: 1

Carica papaya

evm.TU.supercontig_13.232 Score: 1

Physcomitrella patens

141405 Score: 1
149412 Score: 0.95
149443 Score: 0.95

Chlamydomonas reinhardtii

182666 Score: 1

Physcomitrella patens

141405 Score: 1
149412 Score: 0.912
149443 Score: 0.912

Populus trichocarpa

736814 Score: 1

Physcomitrella patens

141405 Score: 1
149412 Score: 0.921
149443 Score: 0.921

Zea mays

GRMZM2G150440_P01 Score: 1

Expression data

Expressed Sequence Tags

At.12895
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G19810) mRNA, complete cds /cds=p(107,1186) /gb=NM_127539
At.20940
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G44260) mRNA, complete cds /cds=p(107,1252) /gb=NM_123793
At.23916
Arabidopsis thaliana ATCTH (Arabidopsis thaliana Cys3His zinc finger protein); transcription factor (ATCTH) mRNA, complete cds /cds=p(100,1047) /gb=NM_128150
At.23950
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G41900) mRNA, complete cds /cds=p(317,2467) /gb=NM_129754
At.43010
Arabidopsis thaliana At1g03790 mRNA for unknown protein, complete cds, clone: RAFL16-76-P06 /cds=p(65,1246) /gb=AK117219
At.4530
Arabidopsis thaliana unknown protein (At4g29190) mRNA, complete cds /cds=p(67,1137) /gb=AY045970
At.67031
AV530845 Arabidopsis thaliana flower buds Columbia Arabidopsis thaliana cDNA clone FB010d03F 3', mRNA sequence /clone=FB010d03F /clone_end=3' /gb=AV530845
Mtr.11645
NF111B08PL1F1073 Phosphate starved leaf Medicago truncatula cDNA clone NF111B08PL 5', mRNA sequence /clone=NF111B08PL /clone_end=5' /gb=BI264045
Mtr.14001
METAU86TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY476756
Os.20244
Oryza sativa Japonica Group cDNA clone:J023119N23, full insert sequence /cds=p(113,1273) /gb=AK100770
Os.31975
Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence /gb=AK106392
Pth.2984
Populus trichocarpa clone WS01121_A14 unknown mRNA /cds=p(146,2278) /gb=EF145149
Pth.3311
Populus trichocarpa clone WS01117_K24 unknown mRNA /cds=p(46,1200) /gb=EF144742
Vvi.19273
VVH008E08_739651 CabSau Flower Nectary Stage 25 (NECu0025) Vitis vinifera cDNA clone VVH008E08 5, mRNA sequence /clone=VVH008E08 /clone_end=5' /gb=DT014104

Domain Architecture

zf-CCCH PF00642 149443
DomainStartEndBit scoreE-value
zf-CCCH7610129.51.2e-05

Sequences