Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 152562

Identification

Species:
Physcomitrella patens
Gene model
152562
Description
e_gw1.371.31.1
Family
Orphans
3D structure (top 5)
2RGT 1M3V 1RUT 2JTN 1J2O
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Micromonas pusilla CCMP1545

52025 Score: 1

Expression data

Expressed Sequence Tags

At.21826
Arabidopsis thaliana ubiquitin interaction motif-containing protein / LIM domain-containing protein (AT1G19270) mRNA, complete cds /cds=p(565,2163) /gb=NM_101785
At.37124
Arabidopsis thaliana zinc ion binding (AT2G39830) mRNA, complete cds /cds=p(134,1720) /gb=NM_129542
At.43898
Arabidopsis thaliana zinc ion binding (AT4G36860) mRNA, complete cds /cds=p(219,1856) /gb=NM_202968
Hv.15069
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf82h16, mRNA sequence /gb=AK250393
Os.14601
Oryza sativa Japonica Group cDNA clone:J023020C05, full insert sequence /gb=AK069586
Os.20761
Oryza sativa Japonica Group cDNA clone:J013039D10, full insert sequence /cds=p(404,1864) /gb=AK065760
Os.77670
Oryza sativa Japonica Group cDNA clone:J013073O11, full insert sequence /gb=AK066665
Os.87797
Oryza sativa Japonica Group cDNA clone:001-201-F10, full insert sequence /gb=AK105719
Ppa.12495
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_122122) mRNA, complete cds /cds=p(1,1101) /gb=XM_001759626
Ppa.12856
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_147716) mRNA, partial cds /cds=p(1,1059) /gb=XM_001779739
Ppa.13848
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_112685) mRNA, complete cds /cds=p(1,1137) /gb=XM_001752558
Ppa.19444
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_134951) mRNA, partial cds /cds=p(1,1092) /gb=XM_001769446
Ppa.25408
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_195116) mRNA, complete cds /cds=p(1,1038) /gb=XM_001777987
Ppa.5598
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_153635) mRNA, partial cds /cds=p(1,1191) /gb=XM_001784146
Ppa.5733
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_43146) mRNA, partial cds /cds=p(1,1029) /gb=XM_001759520

Domain Architecture

LIM PF00412 152562
DomainStartEndBit scoreE-value
LIM25839.21.5e-08

Sequences