Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 154145

Identification

Species:
Physcomitrella patens
Gene model
154145
Description
e_gw1.412.3.1
Family
Pseudo ARR-B
3D structure (top 5)
1K66 3HEB 1W25 2AYX 1K68
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_1.279 Score: 1

Chlamydomonas reinhardtii

166515 Score: 1

Coccomyxa sp. C-169

71524 Score: 1

Micromonas pusilla CCMP1545

48139 Score: 1

Ostreococcus lucimarinus

29755 Score: 1
41670 Score: 1

Ostreococcus tauri

23022 Score: 1

Populus trichocarpa

227771 Score: 1

Selaginella moellendorffii

438647 Score: 1

Physcomitrella patens

154145 Score: 1
165025 Score: 1

Vitis vinifera

GSVIVP00024444001 Score: 1
GSVIVP00029486001 Score: 1

Zea mays

GRMZM2G179024_P01 Score: 1

Expression data

Expressed Sequence Tags

At.1676
Arabidopsis thaliana APRR3 (PSEUDO-RESPONSE REGULATOR 3); transcription regulator (APRR3) mRNA, complete cds /cds=p(397,1884) /gb=NM_125403
At.20552
Arabidopsis thaliana PRR7 (PSEUDO-RESPONSE REGULATOR 7); transcription regulator (PRR7) mRNA, complete cds /cds=p(262,2445) /gb=NM_120359
Hv.21000
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf75k13, mRNA sequence /gb=AK250331
Os.12795
Oryza sativa Japonica Group cDNA clone:J013001E13, full insert sequence /gb=AK120059
Os.58539
Oryza sativa Japonica Group cDNA clone:J023077E22, full insert sequence /gb=AK121136
Pba.9585
WS01229.BR_H11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_H11 5', mRNA sequence /clone=WS01229_H11 /clone_end=5' /gb=DT473373
Ppa.20190
Physcomitrella patens subsp. patens circadian clock protein PRR3 (PpPRR3) mRNA, complete cds /cds=p(1,2325) /gb=XM_001784564
Ppa.3166
Physcomitrella patens subsp. patens circadian clock protein PRR1 (PpPRR1) mRNA, partial cds /cds=p(1,1278) /gb=XM_001784561
Ppa.4916
Physcomitrella patens subsp. patens circadian clock protein PRR4 (PpPRR4) mRNA, complete cds /cds=p(1,3171) /gb=XM_001766053
Ppa.9703
Physcomitrella patens subsp. patens circadian clock protein PRR2 (PpPRR2) mRNA, complete cds /cds=p(1,3432) /gb=XM_001766050
Pth.16941
WS01229.BR_H11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_H11 5', mRNA sequence /clone=WS01229_H11 /clone_end=5' /gb=DT473373

Domain Architecture

Response_reg PF00072 154145
DomainStartEndBit scoreE-value
Response_reg1212894.82.8e-25
CCT37241679.41.2e-20

Sequences