Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 155996

Identification

Species:
Selaginella moellendorffii
Gene model
155996
Description
estExt_Genewise1.C_590120
Family
PHD
3D structure (top 5)
2FWR 1Z3I 3DMQ 1Z5Z 1WP9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

344116 Score: 1

Arabidopsis thaliana

AT2G25170.1 Score: 1

Chlorella sp. NC64A

144734 Score: 1

Carica papaya

evm.TU.supercontig_127.13 Score: 1

Physcomitrella patens

145844 Score: 1

Populus trichocarpa

415868 Score: 1

Sorghum bicolor

5010592 Score: 1

Vitis vinifera

GSVIVP00032703001 Score: 1

Zea mays

GRMZM2G154100_P02 Score: 1
GRMZM2G154100_P01 Score: 0.996

Expression data

Expressed Sequence Tags

At.11745
Arabidopsis thaliana PKL (PICKLE) (PKL) mRNA, complete cds /cds=p(25,4179) /gb=NM_128074
Ppa.22788
Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase (CHR1512) mRNA, partial cds /cds=p(1,3663) /gb=XM_001758649

Domain Architecture

PHD PF00628 155996
DomainStartEndBit scoreE-value
PHD499457.45.4e-14
Chromo96171309.5e-06
Chromo19124156.78.8e-14
ResIII27245612.44.9e-06
SNF2_N278574380.62.8e-111
Helicase_C62970896.87.3e-26
DUF1087831893422.3e-09
DUF108689910491475.8e-41

Sequences

protein sequence
transcript sequence