Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 163618

Identification

Species:
Physcomitrella patens
Gene model
163618
Description
estExt_fgenesh1_pg.C_580112
Family
MYB-related
3D structure (top 5)
2FQ3 2DCE 2COM 2YUS 2ELK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

472410 Score: 1

Arabidopsis thaliana

AT4G34430.1 Score: 1
AT4G34430.2 Score: 1
AT4G34430.3 Score: 1
AT4G34430.4 Score: 0.997

Micromonas sp. RCC299

104814 Score: 1
112657 Score: 1

Ostreococcus lucimarinus

88885 Score: 1

Populus trichocarpa

195378 Score: 1
767450 Score: 1

Sorghum bicolor

5008517 Score: 1

Selaginella moellendorffii

63207 Score: 1

Vitis vinifera

GSVIVP00015425001 Score: 1

Zea mays

GRMZM2G077633_P02 Score: 1
GRMZM2G038220_P03 Score: 0.993
GRMZM2G038220_P04 Score: 0.985

Expression data

Expressed Sequence Tags

Ppa.20419
Physcomitrella patens subsp. patens chromatin remodeling factor subunit (CHB1502) mRNA, complete cds /cds=p(1,2928) /gb=XM_001762914

Domain Architecture

SWIRM PF04433 163618
DomainStartEndBit scoreE-value
SWIRM21330299.31.2e-26
Myb_DNA-binding450495491.7e-11

Sequences