Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 166626

Identification

Species:
Selaginella moellendorffii
Gene model
166626
Description
estExt_Genewise1Plus.C_40592
Family
CCAAT
3D structure (top 5)
1F66 1ID3 2F8N 2JSS 2NQB
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

918601 Score: 1

Arabidopsis thaliana

AT1G51060.1 Score: 1
AT4G27230.1 Score: 1
AT5G54640.1 Score: 1

Carica papaya

evm.TU.supercontig_97.83 Score: 1

Selaginella moellendorffii

166626 Score: 1
76653 Score: 1

Ostreococcus lucimarinus

8995 Score: 1
9152 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g36140.1 Score: 1
LOC_Os08g33100.1 Score: 1

Selaginella moellendorffii

166626 Score: 1
170948 Score: 1
73637 Score: 1

Physcomitrella patens

59714 Score: 1
8691 Score: 1

Populus trichocarpa

571462 Score: 1

Sorghum bicolor

147912 Score: 1

Zea mays

GRMZM2G151726_P03 Score: 1
GRMZM2G042047_P01 Score: 0.905

Expression data

Expressed Sequence Tags

At.17184
Arabidopsis thaliana HTA10; DNA binding (HTA10) mRNA, complete cds /cds=p(73,471) /gb=NM_103984
At.2335
Arabidopsis thaliana HTA2 (HISTONE H2A); DNA binding (HTA2) mRNA, complete cds /cds=p(95,490) /gb=NM_118857
At.29485
Arabidopsis thaliana clone RAFL15-12-B09 (R20557) putative histone H2A protein (At5g54640) mRNA, complete cds /cds=p(64,456) /gb=BT004023
Mtr.1354
MEUB595TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=GE347326
Mtr.4979
METAA05TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474860
Mtr.7576
MEUAV15TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence /clone_end=3' /gb=GE350929
Pba.11467
WS01122.BR_B11 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01122_B11 5', mRNA sequence /clone=WS01122_B11 /clone_end=5' /gb=DT495990
Pba.4034
WS01121.BR_N21 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01121_N21 5', mRNA sequence /clone=WS01121_N21 /clone_end=5' /gb=DT495916
Ppa.21828
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_162789) mRNA, complete cds /cds=p(1,399) /gb=XM_001761139
Ppa.302
Physcomitrella patens subsp. patens histone H2A (HTA1511) mRNA, complete cds /cds=p(198,620) /gb=XM_001762424
Ppa.7722
Physcomitrella patens subsp. patens histone H2A (HTA1505) mRNA, complete cds /cds=p(90,512) /gb=XM_001785164
Pth.16974
Populus trichocarpa clone WS0116_P05 unknown mRNA /cds=p(101,505) /gb=EF146298
Pth.4034
WS01121.BR_N21 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01121_N21 5', mRNA sequence /clone=WS01121_N21 /clone_end=5' /gb=DT495916
Pth.5023
WS01116.B21_N15 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01116_N15 3', mRNA sequence /clone=WS01116_N15 /clone_end=3' /gb=CV247051
Ptp.10323
T084D03 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU836247
Ptp.2600
T021H09 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU831472
Ptp.6807
T082C12.5pR Populus shoot meristem cDNA library Populus tremula x Populus tremuloides cDNA clone T082C12 5', mRNA sequence /clone=T082C12 /clone_end=5' /gb=DN499732
Vca.6443
CBGZ4818.fwd CBGZ Volvox carteri f. nagariensis induced male 69-1b, 8kb neb notI Volvox carteri f. nagariensis cDNA clone CBGZ4818 5', mRNA sequence /clone=CBGZ4818 /clone_end=5' /gb=FD835518
Vvi.7584
WIN0213.TB24_F07 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN0213_F07 3', mRNA sequence /clone=WIN0213_F07 /clone_end=3' /gb=EC926739
Vvi.9328
WIN0415.C21_C05 Cab Sauv pericarp normalized (WIN04) Vitis vinifera cDNA clone WIN0415_C05 3', mRNA sequence /clone=WIN0415_C05 /clone_end=3' /gb=EC932028

Domain Architecture

NF-YC NF-YC 166626
DomainStartEndBit scoreE-value
Histone1992113.19.6e-31
CBFD_NFYB_HMF2589210.0021
NF-YC2810111.82.5e-07

Sequences

protein sequence
transcript sequence