Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 170257

Identification

Species:
Selaginella moellendorffii
Gene model
170257
Description
estExt_Genewise1Plus.C_110503
Family
Jumonji
3D structure (top 5)
2OX0 2W2I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

334149 Score: 1

Arabidopsis thaliana

AT1G08620.1 Score: 1

Carica papaya

evm.TU.supercontig_162.51 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g10770.1 Score: 1

Physcomitrella patens

136290 Score: 1

Populus trichocarpa

241426 Score: 1

Sorghum bicolor

4897240 Score: 1

Vitis vinifera

GSVIVP00002226001 Score: 1

Zea mays

GRMZM2G156910_P02 Score: 1

Expression data

Expressed Sequence Tags

At.26858
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT1G08620) mRNA, complete cds /cds=p(1,3552) /gb=NM_100735
Hv.16169
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124d14, mRNA sequence /gb=AK253132
Os.10868
Oryza sativa Japonica Group cDNA clone:J023127H13, full insert sequence /cds=p(200,3916) /gb=AK121381
Pth.16132
F057P19.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F057P19 3', mRNA sequence /clone=F057P19 /clone_end=3' /gb=CK091187

Domain Architecture

JmjN PF02375 170257
DomainStartEndBit scoreE-value
JmjN1851722.2e-18
JmjC254370229.96.3e-66
zf-C5HC246051361.53.1e-15
FYRN59264426.40.00012
FYRC64776249.61.2e-11

Sequences