Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 172156

Identification

Species:
Populus trichocarpa
Gene model
172156
Description
gw1.I.756.1
Family
C3H
3D structure (top 5)
2E5G 3D2W 1WF0 2JVO 2CPF
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.32141
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G12440) mRNA, complete cds /cds=p(488,2146) /gb=NM_121282
At.33921
Arabidopsis thaliana RNA binding (AT3G63450) mRNA, complete cds /cds=p(1,1215) /gb=NM_116210
Hv.9817
HVSMEg0017F10f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0017F10f, mRNA sequence /clone=HVSMEg0017F10f /gb=BE455906
Os.80130
Oryza sativa Japonica Group cDNA clone:J033114B10, full insert sequence /gb=AK102918
Pba.6544
WS02542.B21_G18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_G18 3', mRNA sequence /clone=WS02542_G18 /clone_end=3' /gb=DT489508
Pth.12941
F101P95.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F101P95 5', mRNA sequence /clone=F101P95 /clone_end=5' /gb=CK101595
Pth.6544
WS02542.B21_G18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_G18 3', mRNA sequence /clone=WS02542_G18 /clone_end=3' /gb=DT489508
Vvi.13513
CAB10006_IIIa_Fa_F02 Cabernet Sauvignon Flower Pre-bloom - CAB1 Vitis vinifera cDNA clone CAB10006_IIIa_Fa_F02 5', mRNA sequence /clone=CAB10006_IIIa_Fa_F02 /clone_end=5' /gb=CB971846

Domain Architecture

zf-CCCH PF00642 172156
DomainStartEndBit scoreE-value
zf-CCCH18721223.30.0009

Sequences