Plant Transcription factor database - Universität Potsdam

version: 3.0

Gene model: 177985

Identification

Species: Selaginella moellendorffii Gene model 177985 Description estExt_Genewise1Plus.C_430073 Family PHD 3D structure (top 5) 1WP9 3DMQ 1Z3I 2FWR 1Z5Z
	PDB entry:

Genome Databases

JGI/DOE

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

Ortholog identification by INPARANOID

Micromonas sp. RCC299

64845 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g08480.1 Score: 1

Expression data

Expressed Sequence Tags

At.11745: Arabidopsis thaliana PKL (PICKLE) (PKL) mRNA, complete cds /cds=p(25,4179) /gb=NM_128074
Os.10905: Oryza sativa (japonica cultivar-group) Os07g0497000 (Os07g0497000) mRNA, partial cds /cds=p(1,1869) /gb=NM_001066240
Ppa.22788: Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase (CHR1512) mRNA, partial cds /cds=p(1,3663) /gb=XM_001758649

Domain Architecture

177985

Domain	Start	End	Bit score	E-value
PHD	50	95	57.6	4.7e-14
Chromo	185	235	68.9	1.9e-17
SNF2_N	272	565	368	1.7e-107
Helicase_C	622	701	93.5	7.1e-25
DUF1087	824	886	49.9	9.7e-12
DUF1086	906	1045	148.6	1.9e-41

Sequences

protein sequence
transcript sequence