Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 178731

Identification

Species:
Populus trichocarpa
Gene model
178731
Description
gw1.I.7331.1
Family
Jumonji
3D structure (top 5)
1VRB 2YU1 3D8C 2W2I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_84.101 Score: 1

Coccomyxa sp. C-169

32439 Score: 1

Ostreococcus lucimarinus

39523 Score: 1

Selaginella moellendorffii

75959 Score: 1

Vitis vinifera

GSVIVP00024661001 Score: 1

Expression data

Expressed Sequence Tags

At.38175
Arabidopsis thaliana AT3g20810/MOE17_10 mRNA, complete cds /cds=p(141,1430) /gb=AY091769
Os.91908
AF53-Rpf_01B_C10_T7.ab1 IRRI Drought Stress Panicle Library Oryza sativa (indica cultivar-group) cDNA clone C0000058 5' similar to unknown, mRNA sequence /clone=C0000058 /clone_end=5' /gb=CA763857
Os.93838
Oryza sativa (japonica cultivar-group) Os09g0489200 (Os09g0489200) mRNA, complete cds /cds=p(1,1104) /gb=NM_001070068

Domain Architecture

JmjC PF02373 178731
DomainStartEndBit scoreE-value
JmjC231338-4.80.0018

Sequences